PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 870aa MW: 94875.9 Da PI: 6.8611

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g059130.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	16	74	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Csa03g059130.1 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP
2	START	168.1	6.1e-53	195	403	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+++d++ W + ++++++++v+ ++ g+++l Csa03g059130.1 195 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTIELL 288 7899****************************************************.7777777777************9999** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 + +l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ s+q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l+ Csa03g059130.1 289 YVQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLY 383 ****************************************999999***************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s + ++kt++a+l+++++ Csa03g059130.1 384 ESPKVLAQKTTMAALRQLKQ 403 **************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.2E-15	13	79	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-17	15	79	IPR009057	Homeodomain-like
CDD	cd00086	9.87E-17	16	76	No hit	No description
Pfam	PF00046	3.1E-16	17	74	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-18	18	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.273	19	75	IPR001356	Homeobox domain
CDD	cd14686	1.20E-6	68	107	No hit	No description
PROSITE profile	PS50848	25.559	185	413	IPR002913	START domain
CDD	cd08875	3.83E-73	189	405	No hit	No description
SuperFamily	SSF55961	8.38E-36	194	406	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.6E-20	194	376	IPR023393	START-like domain
SMART	SM00234	3.2E-38	194	404	IPR002913	START domain
Pfam	PF01852	1.5E-50	195	403	IPR002913	START domain
Pfam	PF08670	1.3E-42	727	849	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence Send to blast
MAMSCKDKLG CLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ 60 IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV HENSYFRQHT 120 HNPSLPAKDT SCESVVTSGQ HQLASQNPPR DASPAGLPSL PAKDTSCESV VTSGQHQLAG 180 QNPPRDASPA GLLSIAEETL AEFLSKATGT AVEWVQMPGM KPGPDSIGII AISHGCTGVA 240 ARACGLVGLE PTRVAEIVKD RPSWFRECRA VDVMNVLPTA NGGTIELLYV QLYAPTTLAP 300 PRDFWLLRYT SVLEDGSLVV CERSLKSTQN GPSMPLVQNF VRAEMLPSGY LIRPCDGGGS 360 IIHIVDHMDL EACSVPEVLR PLYESPKVLA QKTTMAALRQ LKQIAQEVTQ TNSSVNGWGR 420 RPAALRALSQ RLSRGFNEAV NGFTDEGWSV IGDSMDDVTI TVNSSPDKLM GLNLAFSNGF 480 APVSSVVLCA KASMLLQNVP PAILLRFLRE HRSEWADNNI DAYLAAAVKV GPCSARVGGF 540 GGQVILPLAH TIEHEEFMEV IKLEGLGHSP EDAIVPRDIF LLQLCSGMDE SAVGTCAELI 600 FAPIDASFAD DAPLLPSGFR IIPLDSAKEV SSPNRTLDLA SALEVGSAGT KASTDQSGNS 660 TCARSVMTIA FEFGIESHMQ EHVASMARQY VRGIISSVQR VALALSPSHI SSQVGLRTPL 720 GTPEAQTLAR WICQSYRGYM GVELLKSNSE GNESVLKNLW HHTDAIICCS MKALPVFTFA 780 NQAGLDMLET TLVALQDISL EKIFDDNGRK TLCSEFPQIM QQGFACLQGG ICLSSMGRPV 840 SYERAVAWKT KLLPFGCSKT VRLFFLMLL*

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence Send to blast

MAMSCKDKLG CLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV HENSYFRQHT  120
HNPSLPAKDT SCESVVTSGQ HQLASQNPPR DASPAGLPSL PAKDTSCESV VTSGQHQLAG  180
QNPPRDASPA GLLSIAEETL AEFLSKATGT AVEWVQMPGM KPGPDSIGII AISHGCTGVA  240
ARACGLVGLE PTRVAEIVKD RPSWFRECRA VDVMNVLPTA NGGTIELLYV QLYAPTTLAP  300
PRDFWLLRYT SVLEDGSLVV CERSLKSTQN GPSMPLVQNF VRAEMLPSGY LIRPCDGGGS  360
IIHIVDHMDL EACSVPEVLR PLYESPKVLA QKTTMAALRQ LKQIAQEVTQ TNSSVNGWGR  420
RPAALRALSQ RLSRGFNEAV NGFTDEGWSV IGDSMDDVTI TVNSSPDKLM GLNLAFSNGF  480
APVSSVVLCA KASMLLQNVP PAILLRFLRE HRSEWADNNI DAYLAAAVKV GPCSARVGGF  540
GGQVILPLAH TIEHEEFMEV IKLEGLGHSP EDAIVPRDIF LLQLCSGMDE SAVGTCAELI  600
FAPIDASFAD DAPLLPSGFR IIPLDSAKEV SSPNRTLDLA SALEVGSAGT KASTDQSGNS  660
TCARSVMTIA FEFGIESHMQ EHVASMARQY VRGIISSVQR VALALSPSHI SSQVGLRTPL  720
GTPEAQTLAR WICQSYRGYM GVELLKSNSE GNESVLKNLW HHTDAIICCS MKALPVFTFA  780
NQAGLDMLET TLVALQDISL EKIFDDNGRK TLCSEFPQIM QQGFACLQGG ICLSSMGRPV  840
SYERAVAWKT KLLPFGCSKT VRLFFLMLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g059130.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ439449	0.0	AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBank	AY060556	0.0	AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500807.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	R0IKW4	0.0	R0IKW4_9BRAS; Uncharacterized protein
STRING	XP_010500807.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2022	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]