PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g055340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 200aa    MW: 22893 Da    PI: 5.4735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g055340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24.1e-1536123498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + ++ ++ k++++ +p +f+ + g  ++ +  +tle++ g + ++ +  ++ +++++++kGW+eF++a+ L eg f+ F+++g+s+f   v +f+
  Csa03g055340.1  36 KIINLSTIKEKMMKIPERFV-RLG--PKLTDNVTLETPVGFKRSIGI--KRIGNEVWFEKGWSEFAEAHSLSEGHFLFFHYKGKSSF--SVVIFD 123
                     45699999************.565..446679***************..*********************************99999..787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-1928124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-1930124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-1432123No hitNo description
PROSITE profilePS5086311.71633125IPR003340B3 DNA binding domain
SMARTSM010197.2E-1434125IPR003340B3 DNA binding domain
PfamPF023626.0E-1336123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRNTPTTRRS SVRITSAASQ RRLTPEPEPA VKKFIKIINL STIKEKMMKI PERFVRLGPK  60
LTDNVTLETP VGFKRSIGIK RIGNEVWFEK GWSEFAEAHS LSEGHFLFFH YKGKSSFSVV  120
IFDVTASEIE YPLDKVYVIE SDDDDKEEVM EVMDDDDEQG FAGFESSESE GVIELDELLK  180
NKKRIQRVSV KSEKFASFW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g055340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500489.11e-142PREDICTED: B3 domain-containing protein At1g49475-like
SwissprotQ9XIB46e-92Y1475_ARATH; B3 domain-containing protein At1g49475
TrEMBLA0A178WDC19e-91A0A178WDC1_ARATH; Uncharacterized protein
STRINGXP_010500489.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-86B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]