PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g055020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 724aa    MW: 83066.9 Da    PI: 8.0205
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g055020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like697.9e-22412469155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                     k+r+ Wt++LH++F+ea+e  GG+ekA Pk +l++   mk++gLt+++v+SHLQk+R+
  Csa03g055020.1 412 KQRMTWTKDLHNKFLEAIEINGGIEKANPKVLLDClqgMKIQGLTRNNVASHLQKHRI 469
                     79****************************986543339******************7 PP
2Response_reg62.22.8e-21241311108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vd + + + ++++++++++y +v+  +d+e+al+ l  +++d+++++ D  mp++dGl++lk+i+++  +lp++++ + ++ e +++a+  G
  Csa03g055020.1  24 VLVVDTNFTTLLNMKRIMRQHDY-QVTIETDAEKALAFLtsCKHDINIVIWDYHMPEIDGLQALKSIASKM-DLPVMIMADDNQTESVIKAIVHG 116
                     89*********************.99999999****999888999**********************9866.9********************** PP

                     ESEEEESS--HHHHH CS
    Response_reg  94 akdflsKpfdpeelv 108
                     a d++ Kp++++++ 
  Csa03g055020.1 117 ACDYVLKPVKEDKIE 131
                     **********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.37E-2621146IPR011006CheY-like superfamily
SMARTSM004482.7E-1722134IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.4E-2822155No hitNo description
PROSITE profilePS5011034.97123138IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.7E-1824131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.48E-1825137No hitNo description
SuperFamilySSF466892.69E-12410472IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-20410473IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-16412469IPR006447Myb domain, plants
PfamPF002491.3E-5414468IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
SKDEVDSTSD ITSLLNQFPA NTNVLVVDTN FTTLLNMKRI MRQHDYQVTI ETDAEKALAF  60
LTSCKHDINI VIWDYHMPEI DGLQALKSIA SKMDLPVMIM ADDNQTESVI KAIVHGACDY  120
VLKPVKEDKI ENLWQHIVRK KVMSKRNISP PVKSDLAQTD GLKQGKVDSK IVDQEQNIGK  180
KEKSAPTRPW TREIQAVQSD LVQINVLEQH NEYPITINQD NGEQNIGKNI EGAANGPWMG  240
EIQSVQVDVV QVNVLDQHNN YSKTINQDHG KLNIDKKEES GAKRPLITWN RELQPVQSDL  300
LQINVFNKHN YYHKTRNQDS GERSIDKKKE RVETRPWMTW TKATQPFQIN DLAQQNYYSK  360
RINQDKGEQS IDKADKKPCM RAEEKELVQT DDSNNGDSVE IIDKRVWRKT RKQRMTWTKD  420
LHNKFLEAIE INGGIEKANP KVLLDCLQGM KIQGLTRNNV ASHLQKHRIY LEEKQIPQTQ  480
NIGWSTEYRA APSLQGLNYV HTGILQYVSN GPALNPIQQN QYLNGAVNPI QHNQYQNGAV  540
NHIHQKEYQN GVVNPIQQNQ NGAVNSIQQN DQYQNRAVNP FQHNDQYQSK VVNLIQQNQY  600
QNGAVNPIQQ KQYQNGVVNP IKQNQYQNGA ANLSQQNQYQ NRAVNLIQQN DQYQNGYLAM  660
NKNPFITNPS LPRVFYFDNQ PRQPQQQQSS PQFNYLTSNE ELGKGSDIYA PDPQLTYQNL  720
PYM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g055020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0160411e-50AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence.
GenBankCP0026841e-50CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096303.10.0PREDICTED: uncharacterized protein LOC104779235
TrEMBLR0IK330.0R0IK33_9BRAS; Uncharacterized protein
STRINGXP_010501906.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.21e-163response regulator 19