PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa03g053730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 735aa MW: 81962 Da PI: 8.4012 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 260 | 281 | 5 | 25 |
--SGGGGTS.--TTTTT-SS-S CS zf-CCCH 5 lCrffartG.tCkyGdrCkFaH 25 +Crffa++ +C+ G++C+F+H Csa03g053730.1 260 PCRFFAQGSgYCRNGNNCRFSH 281 7******669************ PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.15 | 255 | 285 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 735 aa Download sequence Send to blast |
MSGSGRKRVS KWDTKEEDTQ HPSGNDYPGK LGFRDNDPEH ARFYPESNGR NGSRRAGPDD 60 DGDEHLKPRQ HSGEAWPSRS RVSHDDGDAM MGYYDDPRNS SEQDESRQQY FRQSASKDRA 120 RTRRSGSRSN SRSRSRSPSQ RVRRDGGGSY DRHKTRARVS PRSGREFDGR HNRAGDYDWD 180 GSNRKTRDTK YYTEDSREQQ PIRVGGRTDY SSDFPEDNTN SRRETSDPIS RNYRNEAGRD 240 RETHRRDAPE GEFHRSSNIP CRFFAQGSGY CRNGNNCRFS HHGAPSARGS PERKPQDEMY 300 SRHDNNNNSG TTERMRNSHR WNDVERSDAR KSNEVEISRV SKGMSDAKGN NSSWIDDMEM 360 SPDWNYGVKT VMKPEEHGSI SQSSQSQVLK DASAPAYEHD VASIAQQDGN RRTVGMFTTV 420 GEKTVASSHH NNFINNLATS APPVQAFNQN TENHIAVPYQ STPLAVGGSQ VLLPAATNLP 480 GGLNSSNPEN GNALNNVSRE ELNHISNISA SLAQFFGNGQ PKPIPIPNLH STLNPKQAMQ 540 VPEVYGVKEQ SSHTQSDFPS NNTIHIGGVP AVPALQIHNS DAQQVRIPEN LVSLAVNPKA 600 SSEENRDKKT DEEAGKKPDG KKTGEEEDED AEEEEDDGAG DENNKKEKDP KGMRAFKFAL 660 VEIVKELLKP AWKEGGMNKD AYKNIVKKVV DKVTGAIQSG NIPQTQEKID HYLSASKPKL 720 TKLVQAYVSK VKKS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa03g053730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010500425.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1 | ||||
Refseq | XP_010500426.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like isoform X1 | ||||
Swissprot | Q9LIH5 | 1e-171 | C3H38_ARATH; Zinc finger CCCH domain-containing protein 38 | ||||
TrEMBL | R0GVC1 | 0.0 | R0GVC1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010500425.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9160 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 7e-18 | C3H family protein |