PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g051450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 164aa MW: 18947 Da PI: 4.9183 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.6 | 1.7e-12 | 99 | 159 | 2 | 67 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 Y++++ GF+vrk++ k + n+++++ +vCskeg+r+e+kkk ++ ++ tr+gCka++ Csa03g051450.1 99 AYEKFGGLHGFDVRKQQRKIK--NNKVVRLLYVCSKEGFRKETKKK---TSYSQRITRCGCKAHMA 159 599***********9986665..6679***************9988...889999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-9 | 99 | 159 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MENSHEVVHD DQYESSMQVS PLGEPSCLSQ KQFEFKAEKY DSVSDDDKFE EEEEDDIANK 60 EDYVETEEIS TLEPNTKNEK KDELCIGMEF SSDESAHKAY EKFGGLHGFD VRKQQRKIKN 120 NKVVRLLYVC SKEGFRKETK KKTSYSQRIT RCGCKAHMAC YLT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g051450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010513339.1 | 1e-98 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | R0H6H2 | 1e-57 | R0H6H2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010513339.1 | 5e-98 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6200 | 6 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-08 | FAR1 family protein |