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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa03g039280.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
ERF |
Protein Properties |
Length: 365aa MW: 39257 Da PI: 5.4249 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa03g039280.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 64.8 | 1.7e-20 | 144 | 193 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g
Csa03g039280.1 144 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 193
59******9.**********955...5*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MADFFGGSGG HGGELMEALQ PFYKSASTSA SDSAFGSSNA AFVSAPNDPY SSSSYYNPHA 60 SFTTPYPDLY AGSMTYPSSF GSDLQQPDSL EQNYQSQFHY QNNITYPHED NTCMLNFIDP 120 NQPGFMTQPG PVSGSGLVSK PAKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA 180 ALAYDRAAFK LRGDSARLNF PALRYQTGSS PSDSGEYGPI QAAVDAKLEA ILAEPKNQPG 240 KTERSSRKRA KATASSAEQP AAPQQHSGSG ESDGSGSAIL AEPKNQPGKT ERSSRKRAKA 300 TASSAEQPAA PQQHFGSGES DGSGSPTSDV LVPEMCEEAE MPWNENFMLG KCPSYEIDWA 360 SILS*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC006228 | 0.0 | AC006228.5 Genomic sequence for Arabidopsis thaliana BAC F5J5, complete sequence. |
GenBank | AC021666 | 0.0 | AC021666.5 Arabidopsis thaliana chromosome 1 BAC T22A15 genomic sequence, complete sequence. |
GenBank | AK228415 | 0.0 | AK228415.1 Arabidopsis thaliana mRNA for putative AP2 domain containing protein RAP2.4 gi|2281633, complete cds, clone: RAFL14-93-D21. |
GenBank | AK230425 | 0.0 | AK230425.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-35-B04. |
GenBank | BT005758 | 0.0 | BT005758.1 Arabidopsis thaliana clone RAFL14-93-D21 (R20359) putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds. |
GenBank | BT006078 | 0.0 | BT006078.1 Arabidopsis thaliana clone U20359 putative AP2 domain transcription factor RAP2 (At1g36060) mRNA, complete cds. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |