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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa03g038710.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
C2H2 |
Protein Properties |
Length: 297aa MW: 33680.8 Da PI: 7.3504 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa03g038710.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17.9 | 8.4e-06 | 138 | 157 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C+ C k+F+r nL+ H+
Csa03g038710.1 138 FSCHVCFKTFNRYNNLQMHM 157
89*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MESPQYEISS SSSSEKPRNH FQPLDLFPNL NQNSCNNTLI EPLPLIDRIN LNSNPNPLYE 60 DEGEEEEEEE EDDVEVDVDL HIGLPGFGKS GNGAKQPKKR NGKEIVTYDA GKDIENEVSG 120 KAYWIPAPEQ ILIGFTHFSC HVCFKTFNRY NNLQMHMWGH GSQYRKGPES LKGTQPRAML 180 GIPCYCCVEG CRNHIDHPRS KPLKDFRTLQ THYKRKHGHK PYSCRICGKL LAVKGDWRTH 240 EKNCGKRWVC VCGSDFKHKR SLKDHVKAFG TGHGPYPTGL FEEQASNSSV SETLFF*
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Functional Description ? help
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Source |
Description |
UniProt | May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF190298 | 0.0 | AF190298.1 Arabidopsis thaliana ecotype Columbia transparent testa 1 (TT1) mRNA, complete cds. |