PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g037480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 681aa    MW: 75404.1 Da    PI: 6.2327
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g037480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.21.4e-3064148187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++e+laL+++r++m++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++ke++++r++++   +++f+qlea
  Csa03g037480.1  64 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYYKRTKETRGGRHDGK--AYKFFSQLEA 148
                     8*********************************************************************86555..5******985 PP
2trihelix104.29.3e-33442526186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k e+laLi++r+ me r++++  k+ lWee+s  m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+
  Csa03g037480.1 442 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 526
                     8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.77157121IPR017877Myb-like domain
SMARTSM007170.006961123IPR001005SANT/Myb domain
CDDcd122033.26E-2664128No hitNo description
PfamPF138371.5E-2064149No hitNo description
SMARTSM007170.011439501IPR001005SANT/Myb domain
PROSITE profilePS500906.667441499IPR017877Myb-like domain
PfamPF138375.9E-22441526No hitNo description
CDDcd122032.65E-29442506No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MEQVGGGGGG GGGNEVVEEA SPISSRPPAN LEELMRFSAA AADDGGGLGG GGGGGSASSS  60
SGTRWPREET LALLRIRSDM DSTFRDATLK APLWEHVSRK LLELGYKRSA KKCKEKFENV  120
QKYYKRTKET RGGRHDGKAY KFFSQLEALN TTPPPPPPPS SSLDVTPLSV ANPILMPTSS  180
SSPFPVFSQP QPQTQPQPPQ THTVSFTPTP QPPPPMAPTF PGVTFSSHSS STASGVGSDD  240
DEEDDMDVDQ ANIAGSSSRK RKRRNRGGGK MMELFEGLVR QVMQKQAAMQ RSFLEALEKR  300
EQERLDREEA WKRQQMSRLA REHEVMSQER AASASRDAAI ISLIQKITGH TIQLPPSLSS  360
SQTPQPPHQP PQPPPAAKRA QEPPLSTAQS QLQQPIMAIP QQQILPPPHL PHQPEQKQQQ  420
QQQQQQEMMV SSEQSSLPSS SRWPKAEILA LINLRSGMEP RYQDNVPKGL LWEEISTSMK  480
RMGYNRNAKR CKEKWENINK YYKKVKESNK KRPQDAKTCP YFHRLDLLYR NKVLGGGGGP  540
STSSGLPQEQ KQSPVSAVKL PQEGVVNVQP HGSAASSEEV EPIEESPQGT EKPEDLVMRE  600
LMQQQQQQQQ QQQQQGSMIG EYEKIEESHN YNNMEEEEEE MDEEELDEDE KSAAFEIAFQ  660
SPANRGGNGH TEPPFLTMVQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114KRSAKKCKE
2258263RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g037480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210450.0AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBankAC0270350.0AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankAJ0032150.0AJ003215.1 Arabidopsis thaliana GTL1 gene.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499862.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
SwissprotQ9C8820.0GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLA0A397Y2Y60.0A0A397Y2Y6_BRACM; Uncharacterized protein
TrEMBLD7KIG80.0D7KIG8_ARALL; Uncharacterized protein
TrEMBLM4FFY60.0M4FFY6_BRARP; Uncharacterized protein
STRINGXP_010499862.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-140GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]