 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa03g036710.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C3H |
| Protein Properties |
Length: 385aa MW: 40754 Da PI: 8.1293 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa03g036710.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 29.4 | 1.4e-09 | 95 | 118 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25
+kt+lC+ f++ GtC+y +C+FaH
Csa03g036710.1 95 FKTKLCCKFRA-GTCPYVTNCNFAH 118
69*********.************* PP
|
| 2 | zf-CCCH | 42.6 | 1e-13 | 261 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
Csa03g036710.1 261 WKTRICNKWEITGYCPFGAKCHFAHG 286
8************************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 1.13E-7 | 92 | 125 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-13 | 92 | 127 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0039 | 94 | 120 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.671 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.1E-7 | 95 | 118 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.47 | 175 | 202 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.29E-7 | 175 | 202 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.244 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.4E-8 | 176 | 202 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.39E-9 | 256 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.3E-17 | 256 | 290 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.2E-9 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.178 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.3E-11 | 261 | 286 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MSHHHRRDSG GDVVHVIPTN NPPPDNWFPN LGDSAVWATE DDYNRVWAVN PDNVSGDNNG 60
PPNKKTRGSP SSSSATTTTT SAASNRTKAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHTV 120
EELRRPPPNW QEIVAAHEEE RSGGMGTPTV AVLEVPREEF QIPSLVSSTA ESGRSFKGRH 180
CKKFYTEEGC PYGESCTFLH DEASRNRESV AISLGPGGYG SGGGSGGGGS ASGGGNSNVV 240
VLGGGAGGSG SGIHIVKPSN WKTRICNKWE ITGYCPFGAK CHFAHGAAEL HRFGGGLVEG 300
EGKDGVSPNP DTKQTGQNPK GHSDTTTLLS PGVPHNVDAS YHSGVALQRA TSAVTQKPGI 360
RTHQKWKGPA KISRIYGDWI DDIE*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK118013 | 0.0 | AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03. |
