PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g036710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 385aa    MW: 40754 Da    PI: 8.1293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g036710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-0995118125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +kt+lC+ f++ GtC+y  +C+FaH
  Csa03g036710.1  95 FKTKLCCKFRA-GTCPYVTNCNFAH 118
                     69*********.************* PP
2zf-CCCH42.61e-13261286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  Csa03g036710.1 261 WKTRICNKWEITGYCPFGAKCHFAHG 286
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.13E-792125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-1392127IPR000571Zinc finger, CCCH-type
SMARTSM003560.003994120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67194121IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-795118IPR000571Zinc finger, CCCH-type
SMARTSM003560.47175202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7175202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244175203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-8176202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.39E-9256291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-17256290IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178260288IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11261286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSHHHRRDSG GDVVHVIPTN NPPPDNWFPN LGDSAVWATE DDYNRVWAVN PDNVSGDNNG  60
PPNKKTRGSP SSSSATTTTT SAASNRTKAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHTV  120
EELRRPPPNW QEIVAAHEEE RSGGMGTPTV AVLEVPREEF QIPSLVSSTA ESGRSFKGRH  180
CKKFYTEEGC PYGESCTFLH DEASRNRESV AISLGPGGYG SGGGSGGGGS ASGGGNSNVV  240
VLGGGAGGSG SGIHIVKPSN WKTRICNKWE ITGYCPFGAK CHFAHGAAEL HRFGGGLVEG  300
EGKDGVSPNP DTKQTGQNPK GHSDTTTLLS PGVPHNVDAS YHSGVALQRA TSAVTQKPGI  360
RTHQKWKGPA KISRIYGDWI DDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g036710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180130.0AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499780.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLD7KHJ60.0D7KHJ6_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010499780.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein