PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g032720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 275aa    MW: 32365.3 Da    PI: 9.8508
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g032720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-0891116227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C f++    C yG+ C+F+H+p
  Csa03g032720.1  91 GEKVCAFYQIHRLCGYGSECRFNHPP 116
                     7889********************97 PP
2zf-CCCH253.2e-08127150327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      + C+ff r G C+ G+ C+F H++
  Csa03g032720.1 127 KPDCKFFKR-GACRKGSECQFYHPK 150
                     689**9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.02389116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.29689117IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-691116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-592115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131124151IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6125150IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5127150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6128149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4130150IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MENEDSGYGI SKEGQIPGAE YSDAESYTRE NLNKRVSDVQ MQRRSHETEW MLWQMARTAD  60
WRARESKILL DERTHGRYEQ VLSSAYPIRP GEKVCAFYQI HRLCGYGSEC RFNHPPLHEL  120
SKMIDQKPDC KFFKRGACRK GSECQFYHPK EMDVGEQFNV LFKFDSQGRT SSLKPKDSWR  180
RYKTKSTYLQ EKRVTKQNQK EEDFGFGINE VGQFRDHQGS NKDAQGIQLQ QKHKDVEMRK  240
RSRSPVRRAN ESRERFGGRS PRRHELGYFK CARV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g032720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091066.11e-171PREDICTED: putative zinc finger CCCH domain-containing protein 10
SwissprotQ9C7P14e-70C3H10_ARATH; Putative zinc finger CCCH domain-containing protein 10
TrEMBLA0A1P8AM378e-78A0A1P8AM37_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
TrEMBLA0A2H1ZED06e-78A0A2H1ZED0_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGXP_010462972.11e-152(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1791568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29600.12e-72C3H family protein