PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g031690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 383aa    MW: 43561.4 Da    PI: 4.5094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g031690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-1713102198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   ++++s+ +v+p ++ ++   +   +k+++l+ + g sW+v    + ++++  ++kGW +Fv++n L++gDf++F ++g++ f   v+
  Csa03g031690.1  13 FFKVF--VSHFSSDYMVIPVPYYDQL--PRLLPKKVILQGPGGCSWNVAT--KIRGDELHFAKGWPKFVEDNTLNDGDFLTFVYNGDDIF--EVS 99 
                     88999..8999***********9766..4558899***************..99999999*************************99988..777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  Csa03g031690.1 100 IYR 102
                     776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2110106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-1611102No hitNo description
SuperFamilySSF1019361.39E-2311106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.42411104IPR003340B3 DNA binding domain
PfamPF023624.3E-1513102IPR003340B3 DNA binding domain
SMARTSM010191.2E-1613104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAAATEFQFP PRFFKVFVSH FSSDYMVIPV PYYDQLPRLL PKKVILQGPG GCSWNVATKI  60
RGDELHFAKG WPKFVEDNTL NDGDFLTFVY NGDDIFEVSI YRSDGCKETS EVFEVEEDKG  120
DSVCSLSSDD TDTPQMENPI PQGRDKGKSN VEDSDEDEDS VYSESSEETE TESDSGSEFK  180
IGNKGKKKDQ EAVPVVEESS EEDGDGDGDS DSDYIEAFGQ LDVEDESNSE DSSYAPEEED  240
TAASTTCVKA KVPNLKSKEP DAAKRRKKVD PKIKDPETYL DDPKNIHFET NVKNRLYELL  300
VHAQLVKDYC LRFGDYVDYI DRFGKLRAKT AKWKDQRVCI KRWIRICKRN KLTKEDRVLC  360
ELLRRGSFVY AIKLHVIREK NL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-131210610104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g031690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937171e-107AB493717.1 Arabidopsis thaliana At4g34400 mRNA for hypothetical protein, partial cds, clone: RAAt4g34400.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019097846.10.0PREDICTED: B3 domain-containing protein At4g34400-like
SwissprotQ9SZ051e-161Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLR0F8940.0R0F894_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010432421.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.13e-76B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]