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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa03g030980.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
C2H2 |
| Protein Properties |
Length: 248aa MW: 26593.5 Da PI: 8.3977 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa03g030980.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.1 | 6.8e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ C+k+Fs+ L H +H
Csa03g030980.1 94 YKCTVCDKTFSSYQALGGHKASH 116
9***********99999998887 PP
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| 2 | zf-C2H2 | 10.8 | 0.0015 | 152 | 171 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++C++C+ksF++ L H
Csa03g030980.1 152 HVCSICNKSFPSGQALGGHK 171
79*********988776665 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM 60
LLARDGDRKH HQPPPPLLPA AAVTADKTME KLSYKCTVCD KTFSSYQALG GHKASHRKNL 120
SQTHSGGGGG DDQSTSSATT TSAVTTGSGK SHVCSICNKS FPSGQALGGH KRCHYEGNNN 180
NSTNNNSSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS TVNGDDEVMS PMPAKKPRFD 240
FPVKLQL*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC012375 | 1e-148 | AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence. |
| GenBank | AF250336 | 1e-148 | AF250336.1 Arabidopsis thaliana zinc finger protein STZ/ZAT10 (STZ/ZAT10) mRNA, complete cds. |
| GenBank | AY034998 | 1e-148 | AY034998.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds. |
| GenBank | AY063006 | 1e-148 | AY063006.1 Arabidopsis thaliana putative salt-tolerance zinc finger protein (At1g27730) mRNA, complete cds. |
| GenBank | CP002684 | 1e-148 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| GenBank | X95573 | 1e-148 | X95573.1 A.thaliana mRNA for salt-tolerance zinc finger protein. |
| GenBank | X98670 | 1e-148 | X98670.1 A.thaliana mRNA for ZAT10 protein. |
| GenBank | X98671 | 1e-148 | X98671.1 A.thaliana zat10 gene. |
| Publications
? help Back to Top |
- Li C,Chang PP,Ghebremariam KM,Qin L,Liang Y
Overexpression of tomato SpMPK3 gene in Arabidopsis enhances the osmotic tolerance.
Biochem. Biophys. Res. Commun., 2014. 443(2): p. 357-62
[PMID:24275141] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Shi H,Chan Z
The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
J. Pineal Res., 2014. 57(2): p. 185-91
[PMID:24962049] - Munekage YN,Inoue S,Yoneda Y,Yokota A
Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
Plant Cell Environ., 2015. 38(6): p. 1116-26
[PMID:25293694] - van Buer J,Cvetkovic J,Baier M
Cold regulation of plastid ascorbate peroxidases serves as a priming hub controlling ROS signaling in Arabidopsis thaliana.
BMC Plant Biol., 2016. 16(1): p. 163
[PMID:27439459] - Corrales AR, et al.
Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
Plant Cell Environ., 2017. 40(5): p. 748-764
[PMID:28044345] - Nguyen HM, et al.
Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
Front Plant Sci, 2017. 8: p. 1001
[PMID:28717360] - Geilen K,Heilmann M,Hillmer S,Böhmer M
WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
Sci Rep, 2017. 7(1): p. 14235
[PMID:29079824] - Liu X, et al.
Histone Deacetylase AtSRT1 Links Metabolic Flux and Stress Response in Arabidopsis.
Mol Plant, 2017. 10(12): p. 1510-1522
[PMID:29107034] - Huang K, et al.
Arabidopsis calcium-dependent protein kinase AtCPK1 plays a positive role in salt/drought-stress response.
Biochem. Biophys. Res. Commun., 2018. 498(1): p. 92-98
[PMID:29196259]
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