PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g028940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 469aa    MW: 52183.4 Da    PI: 9.103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g028940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00077412434123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  Csa03g028940.1 412 HECPICFRVFKSGQALGGHKRSH 434
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-5634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.3E-7731No hitNo description
SMARTSM003550.32931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032936IPR007087Zinc finger, C2H2
PfamPF139121.6E-4933IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-787114No hitNo description
SMARTSM003550.4192114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.24292119IPR007087Zinc finger, C2H2
PROSITE patternPS00028093114IPR007087Zinc finger, C2H2
PfamPF139120.002293116IPR007087Zinc finger, C2H2
SMARTSM003550.14412434IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-10412434IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974412434IPR007087Zinc finger, C2H2
PROSITE patternPS000280414434IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEQFKERKFV CKFCSKRFAC GKSLGGHIRT HMTENSVDSH DEDDESNKLK MVDDNGGQSS  60
YGLRENPKKN KRFVDHRQIM ALKHQQQQQQ LLCCRECGKG FVSSKALCGH MACHSEREKL  120
VMDSQSDTEA SSSPIRRRSK RVVVKHHHKA AFVVGDDNGI MNQFSSAFSD ASEIEPEQKE  180
TALSLMMLSM DSGFKKGHNL MVNSFPESSD NNSVVLETKS SSGELLKMFN VNNVEAFCNK  240
NKLVVDNKTR SGEDNGGVLY DSDNSDSGYF RNGPKKLDSD VSVDGFTRNS GFDNKAVMGS  300
GSGFNSSPTK QDKDMNRFRK EWYKEGGSGS GGSGSGRSSS KYDLRKSKRG FPSYGRKKIK  360
YEFSESVYDS GEHSLLDTDS CADTNRTIKI HHSKSPIVKK ASGTVKKKSK GHECPICFRV  420
FKSGQALGGH KRSHFIGNQE HRTLVIQHEV AHEMHTLIDL NLPAPIDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g028940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499021.10.0PREDICTED: uncharacterized protein LOC104776622
TrEMBLR0GTA20.0R0GTA2_9BRAS; Uncharacterized protein
STRINGXP_010499021.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein