PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g028740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 363aa    MW: 41800.5 Da    PI: 7.2467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g028740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.1e-16100145147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v  +G+ +W++Ia++++ gR++k+c++rw++ 
   Csa03g028740.1 100 RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 145
                      899*****************************.***********996 PP
2Myb_DNA-binding58.91.1e-18152195146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ 
   Csa03g028740.1 152 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 195
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0895146IPR017930Myb domain
SMARTSM007176.5E-1499148IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-28100193IPR009057Homeodomain-like
PfamPF002491.2E-15100145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-26101153IPR009057Homeodomain-like
CDDcd001675.84E-12103144No hitNo description
PROSITE profilePS5129427.753147201IPR017930Myb domain
SMARTSM007174.1E-15151199IPR001005SANT/Myb domain
PfamPF002491.5E-15152194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-21154200IPR009057Homeodomain-like
CDDcd001671.73E-11154194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MFITEKQLWM DEIAARRASS SSWDFPFSDI NINQNHHHRH CNTSHEFEIL KSPLGGITAN  60
EEESNNHNPN FSNSDSAKKE TTDSGQSWSS SSSKPSTLGR GHWRPAEDVK LKELVSIYGP  120
QNWNLIAEKL QGRSGKSCRL RWFNQLDPRI NRRAFTEEEE ERLMQAHRLY GNKWAMIARL  180
FPGRTDNSVK NHWHVIMARK YREHSSAYRR RKLMNNNPLK PHLTATHHPS PNPNNYHSFL  240
STNHYFAQPF PEFNLAHHLN NAPITSDHNQ LVLPFHCFQG FENFDTPMVV SMFGNQMMVG  300
DNVGATSEAL YKFPYIDPRS QEKADPDEPM NWLGTEAVNE DVIEKAKKEP HFFDFLGLGT  360
GE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31982005107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g028740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348160.0AF334816.1 Arabidopsis thaliana putative transcription factor (MYB117) mRNA, complete cds.
GenBankAY5195590.0AY519559.1 Arabidopsis thaliana MYB transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ4462910.0DQ446291.1 Arabidopsis thaliana clone pENTR221-At1g26780 myb family transcription factor (At1g26780) mRNA, complete cds.
GenBankDQ6528620.0DQ652862.1 Arabidopsis thaliana clone 0000017266_0000012084 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498996.10.0PREDICTED: transcription factor MYB24-like
SwissprotQ9LQX50.0MY117_ARATH; Transcription factor MYB117
TrEMBLD7KQL70.0D7KQL7_ARALL; T24P13.16
STRINGXP_010498996.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.20.0myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]