PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g024850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 1058aa    MW: 116723 Da    PI: 8.3527
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g024850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.3e-40145221177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv++C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh+lsefDe+krsCrrrLa+hn+rrrk+ 
  Csa03g024850.1 145 MCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHRLSEFDEGKRSCRRRLAGHNRRRRKTM 221
                     6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-33140207IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.958143220IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.1E-36144221IPR004333Transcription factor, SBP-box
PfamPF031101.1E-28146219IPR004333Transcription factor, SBP-box
PROSITE profilePS512969.33635696IPR017941Rieske [2Fe-2S] iron-sulphur domain
Gene3DG3DSA:1.25.40.202.3E-8809954IPR020683Ankyrin repeat-containing domain
CDDcd002043.49E-11809952No hitNo description
SuperFamilySSF484032.06E-9809952IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.516852965IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 1058 aa     Download sequence    Send to blast
MDEVGAQVAT PMFIHPSLSP MGRKRDLYYP MSSRLVPSQQ QQPQRRDEWN SKMWDWDSRR  60
FEAKPVDAQT LCLENVTTQQ FDLTSRNKSG GGEERGLDLN LGSGLTALEE TTTATATPTA  120
TPTTQNVRPS KKVRSGSPGG GNYPMCQVDN CTEDLSHAKD YHRRHKVCEV HSKATKALVG  180
KQMQRFCQQC SRFHRLSEFD EGKRSCRRRL AGHNRRRRKT MQPEEIASGV VVPGNRDNNT  240
SNAKMDLMAL LTALACAQGK NDVKPVSSPA VPDREQLLQI LNKINALPLP MDLVSKLNNI  300
GSLARKNLDQ PMANPTNDMN GASPSTMDLL AVLSSTLGSS SPDALAILSQ GGFGNKDSDK  360
TKLSSYDHGV TTNVEKRTFG FSSGGGERSS SSNQSPSQDS DSRAQDTRSS LSLQLFTSSP  420
EDESRPTVAS SRKYYSSASS NPVEDRSPSS SPVMQELFPL QTSPETMRSK NHNNSSPSRT  480
GCLPLELFGA SNRGTANPNF KGFGQQSGYA SSGSDYSSPS LNSDAQDRTG KIVFKLLDKD  540
PSQLPGTLRS EIYNWLSNIP SEMESYIRPG CVVLSVYIAM SPAAWEQLER NLLQRLGVLL  600
QNPQSDFWRN VRFIVNTGRQ LASHKNGRVR CSKSWRTWNS PELISVSPIA VVAGAETSLV  660
VRGRSLTNDG ISIRCTHMGS YMSMEVTGAA CRQAVCDELN VNSFKVQNAQ PGFLGRCFIE  720
VENGFRGDSF PLIIANASIC KELNRLEEEF HPKSQDTSEE HAQSTDRRPT SREEVLCFLN  780
ELGWLFQKNQ TSELREQSDF SLARFKFLLV CSVERDYCAL IRTLLDMLVE RNLVNDELNT  840
EALDMLAEIQ LLNRAVKRKS TKMVELLIHY SVNPSALDSS NNFVFLPNII GPGGITPLHL  900
AACTSGSDDM VDLLTSDPQE IGLSSWNSLR DATGQTPYSY AAIRNNHSYN SLVARKLADK  960
RNKQVSLNIE NEIVDQKGLS KRLSSEMNKS SCASCATVAL KYQRRVSGSH RLFPTPIIHS  1020
MLAVATVCVC VCVFMHAFPI VRQGSHFSWG GLDYGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32136219184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g024850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269070.0AK226907.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 14, clone: RAFL09-16-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498553.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLR0GUT00.0R0GUT0_9BRAS; Uncharacterized protein
STRINGXP_010498553.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]