PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g023710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 448aa    MW: 48828.2 Da    PI: 5.0392
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g023710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.1e-06395417426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++f  t  C++G++C + H+
  Csa03g023710.1 395 KPCMYFNSTRGCRHGSNCLYQHD 417
                     69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.343391419IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4395418IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5396435IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVKRYPLNRD SNAVICNVFA DGKYFGKIAR GWIRCPAEEE EDVTERNITV FQVRLFISED  60
SPSQVGSESQ DHLQAKSSLA SHPGDDNLPP GFGGPLSANE PQIRLSDIAV IKWKCSVRIL  120
LDEEWRVIAG DESKEVEAQN QRELRVLEAF YPGASSIPLN PSVPADVENS HYDDQQTIVI  180
PILPVEDDDI AMDSASDLPT QSGTSVGTAP SIPNQNTSTS SILPSGSDIM AALSAISNSK  240
EQGSSMIDQD LLIKILSNPK LVENLVANSG SAGSISSNAS GLYPSSTHEA NGAVTTTPAS  300
NGHFYPQPVV TQCPPMVYPP PAPSDQHNYG APPARDASYY KNLIQQHGGE RQETPPVQPH  360
LGFRYNLPPG GPNQEMINSN NNNQRPRDSK PKIMKPCMYF NSTRGCRHGS NCLYQHDATP  420
YQPRNLNNGN INTSEMQSAK RMRFDRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g023710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215790.0AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10.
GenBankBT0255570.0BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498409.10.0PREDICTED: zinc finger CCCH domain-containing protein 6 isoform X2
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLR0IPE40.0R0IPE4_9BRAS; Uncharacterized protein
STRINGXP_010498408.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.22e-06HB-other family protein
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]