PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa03g023030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 21673.7 Da PI: 4.7034 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 1e-19 | 11 | 62 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+ykGVr +k +g+Wv+eIr p++ r r++lg+++t+e+Aa+a +aa +l+g+ Csa03g023030.1 11 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALYCLRGN 62 89*****999.**********933...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-12 | 11 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-21 | 11 | 71 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.59E-28 | 11 | 71 | No hit | No description |
PROSITE profile | PS51032 | 22.181 | 12 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 12 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-30 | 12 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MDGSSSSSMQ SKYKGVRKRK WGKWVSEIRL PNSRERIWLG SYDTPEKAAR AFDAALYCLR 60 GNNAKFNFPD NPPVISGGRN LSRSEIRESA ARFANSEEED SSVRAGYETR QLQESTLNSM 120 DIIDSEFLSM LPTVGSGNFA SEFGLFPGFD DYSDEYSGDR FREQLSPTQQ HDYYYHGEEA 180 YDASMILWNF * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 3 | 77 | 5 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 13 | 19 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa03g023030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498331.1 | 1e-139 | PREDICTED: ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 1e-112 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | R0I9A0 | 1e-112 | R0I9A0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010498330.1 | 1e-139 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1614 | 28 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19210.1 | 1e-112 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|