PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g022860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 292aa    MW: 31986.7 Da    PI: 6.0468
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g022860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28e-13105149347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+++++ + ++ G+g+Wk I+r + k Rt+ q+ s+ qky
   Csa03g022860.1 105 PWTENEHKRFLIGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKY 149
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.72498154IPR017930Myb domain
SuperFamilySSF466891.27E-16100154IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17101152IPR006447Myb domain, plants
SMARTSM007171.1E-6102152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-10104149IPR009057Homeodomain-like
CDDcd001671.95E-6105150No hitNo description
PfamPF002492.4E-9105149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAAVSSSSET GGSGAVVKRD EIMLFGVRVV VDPMRKCVSL NNLSDYEEKS SPDDDQIPKL  60
LVAGEDKNEA DATTVILADG YASANDAVHI SSSSGGNRER KRGVPWTENE HKRFLIGLQK  120
VGKGDWKGIS RNFVKSRTPT QVASHAQKYF LRRTNLNRRR RRSSLFDITT DTVTDMPMEQ  180
DQAQECSPLP ETNISSGHDQ VMQVFPEVAV PTKIETSPQQ TFNLNDTYLV PVTFQANPAF  240
NLNTDAAPLS LNLSLATSFN LNEQPNSRHS AFTMMPSFSD GDSNSSIIRV G*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g022860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498308.10.0PREDICTED: transcription factor MYB1R1
RefseqXP_019099079.10.0PREDICTED: transcription factor MYB1R1
RefseqXP_019099080.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ2V9B06e-61MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLR0IPK71e-157R0IPK7_9BRAS; Uncharacterized protein
STRINGXP_010498307.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.21e-157MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]