PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g020790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | STAT | ||||||||
Protein Properties | Length: 542aa MW: 60774 Da PI: 5.365 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 183.1 | 3.5e-57 | 221 | 338 | 1 | 117 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk. 94 ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++ eapLL+sy+Gvefs+ d+p++ll+G+asfklkisqLs +d+rLf+ikfeip++k+ Csa03g020790.1 221 LDVVLTNAIGQPVHKDVKVVASLLYADSGTPVEKMSGFEAPLLVSYEGVEFSAADKPCNLLNGCASFKLKISQLSPMSDERLFCIKFEIPEVKAc 315 8********************************************************************************************99 PP STAT 95 ypfleavskpirCisrsrntrss 117 ypfle+v+++irCi r+r++ + Csa03g020790.1 316 YPFLETVTNQIRCILRNRDSVTP 338 ******************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13385 | 7.2E-7 | 23 | 143 | No hit | No description |
Gene3D | G3DSA:2.60.120.200 | 9.5E-5 | 24 | 142 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 3.01E-8 | 27 | 165 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MAGDCAINTE KYSLLEDFNV DVQVQNQGFE SFSLCFWVYL LDSTTYPSTI IRQVHSDMSV 60 SAPFLVLDEK KKMMLLPLTL LHKEAPDPVN ISSWTEVPNV STTAEFPLQT WVHVGCEVSR 120 NYMRLYICGE LAGEQVLTSL MTNGTYFDRT RKISLFSVGG DGYSVQGFIH CAEVLPSNVP 180 ACYHYKKDPP LCLSVDKPST SGIKLDEDGV WSIVGGTFCS LDVVLTNAIG QPVHKDVKVV 240 ASLLYADSGT PVEKMSGFEA PLLVSYEGVE FSAADKPCNL LNGCASFKLK ISQLSPMSDE 300 RLFCIKFEIP EVKACYPFLE TVTNQIRCIL RNRDSVTPKR SNHIDYPLDG RDQKLASRNG 360 TPDILQSSSS MKRIRLGEEK VSESKFQNGN GTSMEWRPQA QNHEEEEDNS STDSENTKIK 420 DSTGFRRYTI PDSMIFRYCL ANLTERSLLL KEITNNSSDE EVSEFADQVS LYSGCSHHSY 480 QIKMARKLIA EGTNAWILIS RNYQHVHWDN VVIEIEEHFM RIAKCSSRSL THQVLSLSIL 540 I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g020790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT046180 | 0.0 | BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498042.1 | 0.0 | PREDICTED: uncharacterized protein LOC104775807 isoform X1 | ||||
Swissprot | B5X561 | 0.0 | SHA_ARATH; SH2 domain-containing protein A | ||||
TrEMBL | R0IGD0 | 0.0 | R0IGD0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010498042.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.1 | 0.0 | SH2 domain protein A |
Publications ? help Back to Top | |||
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