PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g020790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family STAT
Protein Properties Length: 542aa    MW: 60774 Da    PI: 5.365
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g020790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT183.13.5e-572213381117
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk. 94 
                     ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++  eapLL+sy+Gvefs+ d+p++ll+G+asfklkisqLs  +d+rLf+ikfeip++k+ 
  Csa03g020790.1 221 LDVVLTNAIGQPVHKDVKVVASLLYADSGTPVEKMSGFEAPLLVSYEGVEFSAADKPCNLLNGCASFKLKISQLSPMSDERLFCIKFEIPEVKAc 315
                     8********************************************************************************************99 PP

            STAT  95 ypfleavskpirCisrsrntrss 117
                     ypfle+v+++irCi r+r++ + 
  Csa03g020790.1 316 YPFLETVTNQIRCILRNRDSVTP 338
                     ******************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF133857.2E-723143No hitNo description
Gene3DG3DSA:2.60.120.2009.5E-524142IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498993.01E-827165IPR013320Concanavalin A-like lectin/glucanase domain
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAGDCAINTE KYSLLEDFNV DVQVQNQGFE SFSLCFWVYL LDSTTYPSTI IRQVHSDMSV  60
SAPFLVLDEK KKMMLLPLTL LHKEAPDPVN ISSWTEVPNV STTAEFPLQT WVHVGCEVSR  120
NYMRLYICGE LAGEQVLTSL MTNGTYFDRT RKISLFSVGG DGYSVQGFIH CAEVLPSNVP  180
ACYHYKKDPP LCLSVDKPST SGIKLDEDGV WSIVGGTFCS LDVVLTNAIG QPVHKDVKVV  240
ASLLYADSGT PVEKMSGFEA PLLVSYEGVE FSAADKPCNL LNGCASFKLK ISQLSPMSDE  300
RLFCIKFEIP EVKACYPFLE TVTNQIRCIL RNRDSVTPKR SNHIDYPLDG RDQKLASRNG  360
TPDILQSSSS MKRIRLGEEK VSESKFQNGN GTSMEWRPQA QNHEEEEDNS STDSENTKIK  420
DSTGFRRYTI PDSMIFRYCL ANLTERSLLL KEITNNSSDE EVSEFADQVS LYSGCSHHSY  480
QIKMARKLIA EGTNAWILIS RNYQHVHWDN VVIEIEEHFM RIAKCSSRSL THQVLSLSIL  540
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g020790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010498042.10.0PREDICTED: uncharacterized protein LOC104775807 isoform X1
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLR0IGD00.0R0IGD0_9BRAS; Uncharacterized protein
STRINGXP_010498042.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]