PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g020270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18517.1 Da PI: 8.2779 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.5 | 1.1e-43 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrrkC+kdCv+apyfp+++p kfa+vhk+FGasnv k+l++l+e+++ da++s+vyeA+ar++dPvyG+vg+i++lq+qle l+++la Csa03g020270.1 14 PCAGCKLLRRKCVKDCVFAPYFPSKEPYKFAIVHKIFGASNVNKMLQELSENQQGDAVNSMVYEANARVQDPVYGCVGTISSLQRQLEALQTQLA 108 7********************************************************************************************** PP DUF260 96 llkee 100 +++e Csa03g020270.1 109 FAQAE 113 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.926 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-42 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MRQKGHRHGR PASPCAGCKL LRRKCVKDCV FAPYFPSKEP YKFAIVHKIF GASNVNKMLQ 60 ELSENQQGDA VNSMVYEANA RVQDPVYGCV GTISSLQRQL EALQTQLAFA QAELIHMRTS 120 TLCRIDIKPS PYTPSTVTFP TNKDFSSDVD MAFVYEDGSG DSLWSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-44 | 13 | 125 | 10 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-44 | 13 | 125 | 10 | 122 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g020270.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010497950.1 | 1e-124 | PREDICTED: LOB domain-containing protein 3-like isoform X2 | ||||
Swissprot | Q9SA51 | 1e-101 | LBD3_ARATH; LOB domain-containing protein 3 | ||||
TrEMBL | D7KEG5 | 1e-104 | D7KEG5_ARALL; Predicted protein | ||||
STRING | XP_010497944.1 | 1e-123 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16530.1 | 1e-103 | ASYMMETRIC LEAVES 2-like 9 |
Publications ? help Back to Top | |||
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