PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g019490.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 406aa    MW: 46420.3 Da    PI: 5.8434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g019490.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09356402347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       WT+eE   l ++vk++G+  Wk + +  +     R++ ++k++w+++
   Csa03g019490.1 356 FWTPEEVAALREGVKEFGKS-WKDVKNSNPvvlADRSEVDLKDKWRNL 402
                      5*****************88.************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.267349405IPR017930Myb domain
SuperFamilySSF466891.09E-11351403IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-10351403IPR009057Homeodomain-like
SMARTSM007175.6E-7353405IPR001005SANT/Myb domain
CDDcd116607.41E-14355402No hitNo description
PfamPF002498.4E-8357402IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEKWVAEFFL RRQQNPRVYG SPLLSALTPV DSDDCVKLKI TAVLRDISNS LIRGTVDEGM  60
LDILEILEKL MLQERSVIMG SLKSAYCWTA AECTLRFMWP VTVSDGFFGD ALERIWKKRI  120
GMLKGRESDL VSHELLKWES DLNEAFEEPE IYRKIRETNI RYNAISHLSQ LVKEQWALLG  180
CSSLESEARK RLLKRKDSRN RGNGFGRAGD NIDNIGVRRE GRNGSSREND NDVEEVGGVE  240
KHDGADKVNE QEQEHEPSLN KGDITVAREL KDFLLEIQRL IDASTRQGQE PDDAMEQSND  300
VTPQHDEANR TEAEDSEGTS SSRRVRPHLP TPEPLNVSPL KKVRLERPRP RRPMKFWTPE  360
EVAALREGVK EFGKSWKDVK NSNPVVLADR SEVDLKDKWR NLFGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g019490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273900.0AK227390.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-05-K06.
GenBankAY5195360.0AY519536.1 Arabidopsis thaliana MYB transcription factor (At1g15720) mRNA, complete cds.
GenBankBT0030850.0BT003085.1 Arabidopsis thaliana At1g15720 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7H20.0AC034256.3 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010497332.20.0PREDICTED: uncharacterized protein LOC104774417, partial
TrEMBLR0II970.0R0II97_9BRAS; Uncharacterized protein
STRINGXP_010497332.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.10.0TRF-like 5