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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g013970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 154aa MW: 17441.1 Da PI: 9.5479 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.6 | 7.9e-12 | 22 | 123 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 k lt sdv+ +++l+lpk+ +e++ + + +++++++d + s++v+l+ +k+g+y ++kGW+ + +gL gDf+ ++ Csa03g013970.1 22 TKRLTDSDVSIKAQLYLPKQLMEHFivpemgnelvqK--LAAGIDVKVRDVDRidHSYTVNLK-LRKDGQYHFGKGWQLLKNTKGLIKGDFIGLY 113 58899*****************777999887766432..23778888888776779*****96.55566899********************999 PP E-SSSEE..EE CS B3 84 ldgrsefelvv 94 d+ +e+++ Csa03g013970.1 114 WDK-LAGEFKF 123 665.4444454 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-12 | 15 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-14 | 16 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.01E-15 | 19 | 124 | No hit | No description |
SMART | SM01019 | 1.3E-8 | 21 | 129 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-9 | 22 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MAHSVNLELG LSQYEDDPWV LTKRLTDSDV SIKAQLYLPK QLMEHFIVPE MGNELVQKLA 60 AGIDVKVRDV DRIDHSYTVN LKLRKDGQYH FGKGWQLLKN TKGLIKGDFI GLYWDKLAGE 120 FKFKHLKTGS PHMPSSSGKG ETSTQEKEKQ ILK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g013970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010491256.1 | 1e-109 | PREDICTED: B3 domain-containing protein At1g10455 | ||||
Swissprot | Q9XIK5 | 7e-55 | Y1045_ARATH; B3 domain-containing protein At1g10455 | ||||
TrEMBL | A0A178W4P2 | 2e-52 | A0A178W4P2_ARATH; Uncharacterized protein | ||||
STRING | XP_010491256.1 | 1e-109 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19929 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 2e-08 | B3 family protein |