PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g013650.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 644aa MW: 72875.9 Da PI: 7.981

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g013650.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.4	6.3e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r ++r+gC+a l+++k + + +w vt + ++HnHel Csa03g013650.1 62 EFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgSTEWLVTGFANHHNHELL 155 6************9998877356667999*********999999*****************9989999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-16	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.0E-20	278	367	IPR018289	MULE transposase domain
Pfam	PF04434	1.7E-8	516	550	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.742	519	552	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.2E-7	527	554	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MSDDAGQMLL IYDDPSDQRS LSLDDASSSE DSPDGTTLSL EAVHDAIPYN GQRFLTHDAA 60 YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS 120 RCGCQAYLRI SKITELGSTE WLVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF 180 SKTGISVQQM MKLLELEKCV EPGFLPFTEK DVRNLLQSFK KLDPDDENID FLRMCQSIKE 240 KDPNFKFEFT LDANDKLENI AWSYASSIQS YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN 300 NYGVPCFFGC VLLREENLRS WSWALQAFTG FMNGKAPQTI LTDHNMCLKE AIAGEMPTTK 360 HALCIWMVVG KFPSWFNAGL GERHINNLYA SRSLWSLPYL RSHFLAGMTL TGRSKAINAF 420 IQRFLSAQTR LAHFVEQVAV AVDFKDQATE QQTMQQNLQN ISLKTGAPME SHAASVLTPF 480 AFSKLQEQLV LAAHYASFQM DDGYLVRHHT KLDGGRKVYW VPQEGIISCS CQLFEFSGFL 540 CRHALRVLST GNCFQVPDRY LPLRWRRIST SFSKTFRSNA EDHGERVQLL QNLVSTLVSE 600 SAKSKERLDI ATEQTSILLS RIREQPVSSS LALRDISSVQ RNF*

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MSDDAGQMLL IYDDPSDQRS LSLDDASSSE DSPDGTTLSL EAVHDAIPYN GQRFLTHDAA  60
YEFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS  120
RCGCQAYLRI SKITELGSTE WLVTGFANHH NHELLEPNQV RFLPAYRSIS DADKSRILMF  180
SKTGISVQQM MKLLELEKCV EPGFLPFTEK DVRNLLQSFK KLDPDDENID FLRMCQSIKE  240
KDPNFKFEFT LDANDKLENI AWSYASSIQS YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN  300
NYGVPCFFGC VLLREENLRS WSWALQAFTG FMNGKAPQTI LTDHNMCLKE AIAGEMPTTK  360
HALCIWMVVG KFPSWFNAGL GERHINNLYA SRSLWSLPYL RSHFLAGMTL TGRSKAINAF  420
IQRFLSAQTR LAHFVEQVAV AVDFKDQATE QQTMQQNLQN ISLKTGAPME SHAASVLTPF  480
AFSKLQEQLV LAAHYASFQM DDGYLVRHHT KLDGGRKVYW VPQEGIISCS CQLFEFSGFL  540
CRHALRVLST GNCFQVPDRY LPLRWRRIST SFSKTFRSNA EDHGERVQLL QNLVSTLVSE  600
SAKSKERLDI ATEQTSILLS RIREQPVSSS LALRDISSVQ RNF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g013650.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF424595	0.0	AF424595.1 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds.
GenBank	BT000486	0.0	BT000486.1 Arabidopsis thaliana unknown protein (At1g10240/F14N23_12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006304862.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_023632540.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_023632541.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	R0IH94	0.0	R0IH94_9BRAS; Uncharacterized protein
STRING	Cagra.4395s0212.1.p	0.0	(Capsella grandiflora)
STRING	XP_006304862.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]