PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g013110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 845aa MW: 95839.6 Da PI: 6.4972 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.2e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Csa03g013110.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 34.4 | 5.1e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k+l++ W+tIa +g Rt+ qc +r+ k+l Csa03g013110.1 60 TEWTREEDEKLLHLAKLLPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.3E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 1.86E-11 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 8.63E-21 | 33 | 108 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 8.92E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.675 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 2.7E-56 | 407 | 655 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD ENYDAADDPR 120 KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDGRHR KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT 240 TIEELEGKRR ADVEAQLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEAVR KRSKLMLPPP 300 QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPSG 360 KGDPIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP RKKEIQTPNP MLTPSMTPGG 420 AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ENAKLERQRR EEAKRSLRSG 480 LTGLPQPKNE YQIVPQLPPE ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ 540 RDFPRPPAAS LELIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLKLLE HDNAKYPLDE 600 KAEKKKGAKN RTNSSASQIL AIEDFEENEL QEADGMIKEE GEFLRVSMDH EDKTLDDFIE 660 ARNRCVNDLI YLPTQNAYGL SSVAANAEKV ASLQVEMENA RKKFEEDEKK AEHMKAKYKT 720 YTKGHERRAE TVWTQIEATL KQIEIGGTEV ECFKALKRQE EMAASFRKKN LQDEVVKQKE 780 TERKLQARYG NLSAMVEKAE EIMVGFRAQA LKKQEDVEDP HKLKEAKLAG GEEEDVAIAM 840 EASA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 792 | 3 | 791 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDGRHRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g013110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY093057 | 0.0 | AY093057.1 Arabidopsis thaliana putative Myb DNA-binding protein (At1g09770) mRNA, complete cds. | |||
GenBank | AY519553 | 0.0 | AY519553.1 Arabidopsis thaliana MYB transcription factor (At1g09770) mRNA, complete cds. | |||
GenBank | BT008801 | 0.0 | BT008801.1 Arabidopsis thaliana At1g09770 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010490310.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A178WIY6 | 0.0 | A0A178WIY6_ARATH; CDC5 | ||||
STRING | XP_010490310.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6453 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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