PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa03g009730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 26216.1 Da PI: 9.857 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 106.4 | 2.2e-33 | 42 | 132 | 1 | 91 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCa+Ck++r+kC+++C+l+py+pa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r+rdPv G++g ++++ ++l+ k Csa03g009730.1 42 ACASCKHQRKKCNNECILSPYYPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQRDPVLGSYGEYRRVCEELKLYK 132 7*********************************************************************************999998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.726 | 41 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-30 | 42 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MKVNKRAKSF LYEGHDMMQR NSNTTTTNNN NNISNNSSSH QACASCKHQR KKCNNECILS 60 PYYPARKTKE FQAVHKVFGV SNVQKMVRTV REEDRTKLSD SLTWEALWRQ RDPVLGSYGE 120 YRRVCEELKL YKSLFHNQPL LGWDNNHQRV YTNNNNNKTT GLVMNSSGSG GFSTVNNNGV 180 GVNGEIVNGG SYTSRDLQDG WENLKHDQRQ QCYAAVINGF KQGQHYLPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-16 | 43 | 119 | 12 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-16 | 43 | 119 | 12 | 88 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa03g009730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F9P14 | 0.0 | AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019097674.1 | 1e-160 | PREDICTED: LOB domain-containing protein 2-like | ||||
Swissprot | Q9LNB9 | 1e-111 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | V4MVQ1 | 1e-110 | V4MVQ1_EUTSA; Uncharacterized protein | ||||
STRING | XP_010485944.1 | 1e-159 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 5e-94 | LOB domain-containing protein 2 |