PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g001860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 343aa    MW: 38703.8 Da    PI: 6.7287
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g001860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-12202227126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF H+
  Csa03g001860.1 202 YQPDICKDYKETGYCGYGDSCKFLHD 227
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9200233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009201229IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8201228IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9202227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13202232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.6E-13261319IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.64E-13277320No hitNo description
PfamPF139201.4E-8277319No hitNo description
PROSITE profilePS5008910.63278316IPR001841Zinc finger, RING-type
CDDcd001625.76E-9278319No hitNo description
SMARTSM001849.2E-5278315IPR001841Zinc finger, RING-type
PROSITE patternPS005180293302IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSNSGESKPS QQEEESQPQP AGQESQSQQV CTFFKKPTKA KNIRKRTVDA DEEDGDSRSQ  60
TSILQNLKKV AKPDSKLYFS SGPSKSSTTT SEAPEKPVFH YDSSKEIQVQ NDSRATATLE  120
TETDFNQDAR AIRERVLKKA DESLKGNKKK ASDEKLYTGI HGYTDHKAGF RREQTISSEK  180
AGGSHGPLRA SAHIRVSARF DYQPDICKDY KETGYCGYGD SCKFLHDRGD YKPGWQIEKE  240
WEEAEKVRKR NKAMGVEDED DEADNDSDED DDALPFACFI CREPFVDPVV TKCKHYFCEH  300
CALKHHTKNK KCFVCNQPTM GIFNAAHEIK KRMAEERSKA EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-652934213326RING finger protein 113A
5z58_M1e-652934213326RING finger protein 113A
6ff4_t1e-652934213326RING finger protein 113A
6ff7_t1e-652934213326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g001860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480383.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGXP_010480383.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein