PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa02g075520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 351aa MW: 39387.7 Da PI: 8.0396 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 97 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Csa02g075520.1 97 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 146 78*******************......55************************997 PP | |||||||
2 | AP2 | 42.6 | 1.5e-13 | 189 | 239 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW++++ + + k+++lg f+t+ eAa+a+++a+ k +g Csa02g075520.1 189 SKFRGVTLHK-CGRWESRLGQF----LNkKYVYLGLFDTEIEAARAYDKAAIKCNG 239 79********.7****995553....234**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-9 | 97 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-16 | 97 | 155 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-31 | 98 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-17 | 98 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.899 | 98 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.03E-11 | 98 | 155 | No hit | No description |
CDD | cd00018 | 1.30E-23 | 189 | 247 | No hit | No description |
Pfam | PF00847 | 1.3E-8 | 189 | 239 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-16 | 189 | 248 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-30 | 190 | 253 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-16 | 190 | 247 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.066 | 190 | 247 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-5 | 191 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-5 | 229 | 249 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MWNLNDSPDH HEASDSRGNR VGHVSNYMTQ STTWLSSVPP VTRNFFPSQV MEPGIYGSGF 60 QGGGKSDPSR SGRPDELAPE ISPPLKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK 120 QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFDIEDYMD DLKQMGDLTK EEFMHVLRRQ 180 STGFPRGSSK FRGVTLHKCG RWESRLGQFL NKKYVYLGLF DTEIEAARAY DKAAIKCNGK 240 DAVTNFDPKV YEQGEELCPE MKWNDHSLDL SLGESNSEEL GFRSEIASIT NRIRDEERLL 300 GSDLSLAMTT TAVRSDGGGS RVGMAASSGF SHPSSPWHHP TPNNFHFFRH * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa02g075520.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK176145 | 0.0 | AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17. | |||
GenBank | AY088238 | 0.0 | AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence. | |||
GenBank | BT029206 | 0.0 | BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010464404.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 | ||||
Swissprot | Q9FH95 | 0.0 | TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3 | ||||
TrEMBL | R0EWM5 | 0.0 | R0EWM5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010464404.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67180.1 | 1e-179 | target of early activation tagged (EAT) 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|