PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa02g073600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | EIL | ||||||||
Protein Properties | Length: 500aa MW: 56890.5 Da PI: 4.8051 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 457 | 1.5e-139 | 38 | 418 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn...............ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipek 80 ++lkkrmwkd++l+++lk++k+++ ++++ +++ +s+ ++ e++rrkkm+r+QD++LkYM+k+mevc+aqGfvYgi+pek Csa02g073600.1 38 DDLKKRMWKDRNLMCKLKQQKRDNH-HNSV-ISSPSSSstsasspvssssaivRRAEASRRKKMARSQDSVLKYMMKIMEVCKAQGFVYGIVPEK 130 79********************986.4444.444444456788999************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS EIN3 81 gkpvegasdsLraWWkekvefdrngpaaisky...qaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172 gkpv+g+sdsLr+WWke+v+fd+++p+a+s+y +a++li+s++s + ++s+ h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPW Csa02g073600.1 131 GKPVTGSSDSLRRWWKENVQFDQTAPNAVSDYltlAAAQLISSNASLD---PNSYIHMLHELQDTTLGSLLSALMQHCVPPQRRFPLEKGLAPPW 222 **********************************999****9987777...99****************************************** PP ---S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX. CS EIN3 173 WPtGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss. 265 WP+G+elwwge+g ++ ++g+ppy+kphdl+kawkvsvL+avikhmsp++e++r+l+rqsk+lqdkm+ake++++++vlnqee+ ++++ + Csa02g073600.1 223 WPNGTELWWGEQGaAAFEHGPPPYRKPHDLRKAWKVSVLAAVIKHMSPNLERVRRLARQSKCLQDKMMAKETDTWSRVLNQEEARLKRLTISDDe 317 *************9999999*******************************************************************99999542 PP .XXXXXXXXXXXXXXXXXXXX......XXXXXX.XXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXX CS EIN3 266 .slrkqspkvtlsceqkedve......gkkeskikhvqavktta.......gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadk 346 + +q+p+v+ +++ + +++e+ ++ ++++k+++ ++p+ +krk +++e++ ++ ++ ++tcq+s++ +s+++l+f dk Csa02g073600.1 318 dKDGDQEPSVFTCFDKESSLNpcflvaQDQEPAVS-MRKDKRADqecflvdQEPFGNKRKGEFVEQQEAMVSSNVYTCQNSSCASSDVSLGFVDK 411 2444477777665555554449***9888888855.777777667999999**************9999999999******************** PP XXXXXXX CS EIN3 347 nsisqne 353 n ++ +e Csa02g073600.1 412 NLRTGHE 418 ****998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 3.5E-124 | 38 | 305 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 1.0E-67 | 181 | 312 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 2.22E-58 | 183 | 308 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 500 aa Download sequence Send to blast |
MVEVQDLEPL SPIQDEDDDD FEEEEGEFDR FGEDISYDDL KKRMWKDRNL MCKLKQQKRD 60 NHHNSVISSP SSSSTSASSP VSSSSAIVRR AEASRRKKMA RSQDSVLKYM MKIMEVCKAQ 120 GFVYGIVPEK GKPVTGSSDS LRRWWKENVQ FDQTAPNAVS DYLTLAAAQL ISSNASLDPN 180 SYIHMLHELQ DTTLGSLLSA LMQHCVPPQR RFPLEKGLAP PWWPNGTELW WGEQGAAAFE 240 HGPPPYRKPH DLRKAWKVSV LAAVIKHMSP NLERVRRLAR QSKCLQDKMM AKETDTWSRV 300 LNQEEARLKR LTISDDEDKD GDQEPSVFTC FDKESSLNPC FLVAQDQEPA VSMRKDKRAD 360 QECFLVDQEP FGNKRKGEFV EQQEAMVSSN VYTCQNSSCA SSDVSLGFVD KNLRTGHEIE 420 CLYGNQEPMN HVAVARTDYL WFERLHDLNC SDQGFEDQTT AVDLNQLPNH SDSNQTMNEE 480 AFSLWDMGCE DKDVYMSQD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 2e-57 | 181 | 311 | 1 | 130 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 2e-57 | 181 | 311 | 1 | 130 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa02g073600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB013395 | 0.0 | AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23. | |||
GenBank | AB493814 | 0.0 | AB493814.1 Arabidopsis thaliana At5g65100 mRNA for hypothetical protein, partial cds, clone: RAAt5g65100. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484313.1 | 0.0 | PREDICTED: ETHYLENE INSENSITIVE 3-like 5 protein | ||||
Swissprot | Q9FJQ5 | 0.0 | EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein | ||||
TrEMBL | R0GUK9 | 0.0 | R0GUK9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010484313.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5879 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65100.1 | 0.0 | EIL family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|