PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g073440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 347aa MW: 39306.6 Da PI: 7.1794 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.7 | 3.7e-11 | 83 | 119 | 3 | 39 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 ++k +rr+++NReAAr+sR+RKka++++Le+ +L Csa02g073440.1 83 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLI 119 6899**************************8655554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.7E-5 | 81 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.772 | 83 | 125 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.4E-8 | 83 | 114 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 4.30E-23 | 85 | 136 | No hit | No description |
SuperFamily | SSF57959 | 2.67E-7 | 85 | 121 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-7 | 87 | 113 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 88 | 103 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.9E-28 | 171 | 246 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNIGNGNMN TPSHIIIPAN NQKLDNNLSE 60 ETSHGTAGTP HMFDQEASTS RNPDKIQRRL AQNREAARKS RLRKKAYVQQ LETSRLKLIQ 120 LEQELDRARQ QGFYVGNGIE TNSLGFSETM NPGIAAFEME YGHWVEEQNR QICELRTVLH 180 GHINDVELCL LVETAMKHYF ELFKMKSTAA KADVFFVMSG MWKTSAERFF LWIGGFRPSD 240 LLKVLLPHFD ILTDQQILDV CNLRQSCQQA EDALSQGMEK LQHTLADCVA GGQLGGGSYI 300 PQVNSAIDRL EALVSFVNQA DHLRHETLQQ MYRILTTRQA ARGLLAL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g073440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317142 | 0.0 | AK317142.1 Arabidopsis thaliana AT5G65210 mRNA, complete cds, clone: RAFL21-72-M22. | |||
GenBank | AK317488 | 0.0 | AK317488.1 Arabidopsis thaliana AT5G65210 mRNA, complete cds, clone: RAFL23-11-L19. | |||
GenBank | AY087049 | 0.0 | AY087049.1 Arabidopsis thaliana clone 31032 mRNA, complete sequence. | |||
GenBank | AY099593 | 0.0 | AY099593.1 Arabidopsis thaliana DNA binding protein TGA1a-like protein (At5g65210) mRNA, complete cds. | |||
GenBank | AY128838 | 0.0 | AY128838.1 Arabidopsis thaliana DNA binding protein TGA1a-like protein (At5g65210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010462108.1 | 0.0 | PREDICTED: transcription factor TGA1 isoform X1 | ||||
Swissprot | Q39237 | 0.0 | TGA1_ARATH; Transcription factor TGA1 | ||||
TrEMBL | R0EWJ4 | 0.0 | R0EWJ4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010462108.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2976 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65210.5 | 0.0 | bZIP family protein |