PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa02g072910.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CAMTA

Protein Properties

Length: 1062aa MW: 118670 Da PI: 6.4689

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g072910.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	188.3	7.8e-59	19	136	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++fq Csa02g072910.1 19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQ 113 45559**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcyw+Le++l +iv+vhylevk Csa02g072910.1 114 RRCYWMLEQDLMHIVFVHYLEVK 136 ******************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	86.275	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.6E-87	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.5E-52	21	135	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.87E-13	446	530	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	14.265	627	690	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.7E-15	628	763	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-14	628	762	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.85E-10	639	760	No hit	No description
PROSITE profile	PS50088	8.843	644	676	IPR002110	Ankyrin repeat
SMART	SM00015	0.32	876	898	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	8.5E-8	877	926	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.858	878	906	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.002	878	897	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0092	899	921	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.304	900	924	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.7E-4	902	921	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1062 aa Download sequence Send to blast
MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML 120 EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS 180 GDSRQASSSL QPNPEPQTVV PQIIHHQNAS TMNSYNTASV LGNPDGWTSA PGIGILSQVH 240 GIRVKESDSQ RSGDVPAWDA SFENSLARYQ NLPYNAPLTQ TQPLQNQVNW QMPVQESVPL 300 QKWPMDSHSG MTDTTDLALF GQRGHENMGT FSSLLGSQNQ QPSSFQAPFT NNEAAYIPKV 360 GPEDLIYEAS ANQTLPLRKA LLKKEDSLKK VDSFSRWVSK ELGEMEDLQM QSSSGGIAWT 420 SVEYETAAAG SSLSPSLSEH QRFTMIDFWP KWTQTDSEVE VMVIGTFLLS PQEVNSYSWS 480 CMFGEVEVPA EILVDGVLCC HAPPHEVGRV PFYITCSDRF SCSEVREFDF LPGSTRKLNA 540 TDIYGANTIE ASLHLRFESL LALRSSVEEH HIFENVGEKR RKISKIMLLK DEKESLLPGT 600 VEKDLTELEA KERLIREEFE DKLYLWLIHK VTEEGKGPNI LDEDGQGVLH LAAALGYDWG 660 IKPILAAGVS INFRDANGWS ALHWAAFSGR QGPQHYLPSL AFFFIKKLLI IHHREDTVAV 720 LVSLGADAGA LADPSPEHPL GKTAADLAYG NGHRGISGFL AESSLTSYLE KLTVDAKENS 780 SADSSGAKAV LTVAERTATP MSYGDVPETL SMKDSLTAVL NATQAADRLH QVFRMQSFQR 840 KQLSELGGDN EFDISDELAV SFAAAKTKKP GHSNGAVHAA AVQIQKKYRG WKKRKEFLLI 900 RQRIVKIQAH VRGHQVRKQY RAIIWSVGLL EKIILRWRRK GSGLRGFKRD TITKPAEPVC 960 PAPQEDDYDF LKEGRKQTEE RLQKALTRVK SMAQYPEARA QYRRLLTVVE GFRENEASSS 1020 SSALKNNNSN TEEAANYNEE DDLIDIDSLL DDDSFMSLAF E*

Sequence ? help Back to Top

Protein Sequence Length: 1062 aa Download sequence Send to blast

MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS  180
GDSRQASSSL QPNPEPQTVV PQIIHHQNAS TMNSYNTASV LGNPDGWTSA PGIGILSQVH  240
GIRVKESDSQ RSGDVPAWDA SFENSLARYQ NLPYNAPLTQ TQPLQNQVNW QMPVQESVPL  300
QKWPMDSHSG MTDTTDLALF GQRGHENMGT FSSLLGSQNQ QPSSFQAPFT NNEAAYIPKV  360
GPEDLIYEAS ANQTLPLRKA LLKKEDSLKK VDSFSRWVSK ELGEMEDLQM QSSSGGIAWT  420
SVEYETAAAG SSLSPSLSEH QRFTMIDFWP KWTQTDSEVE VMVIGTFLLS PQEVNSYSWS  480
CMFGEVEVPA EILVDGVLCC HAPPHEVGRV PFYITCSDRF SCSEVREFDF LPGSTRKLNA  540
TDIYGANTIE ASLHLRFESL LALRSSVEEH HIFENVGEKR RKISKIMLLK DEKESLLPGT  600
VEKDLTELEA KERLIREEFE DKLYLWLIHK VTEEGKGPNI LDEDGQGVLH LAAALGYDWG  660
IKPILAAGVS INFRDANGWS ALHWAAFSGR QGPQHYLPSL AFFFIKKLLI IHHREDTVAV  720
LVSLGADAGA LADPSPEHPL GKTAADLAYG NGHRGISGFL AESSLTSYLE KLTVDAKENS  780
SADSSGAKAV LTVAERTATP MSYGDVPETL SMKDSLTAVL NATQAADRLH QVFRMQSFQR  840
KQLSELGGDN EFDISDELAV SFAAAKTKKP GHSNGAVHAA AVQIQKKYRG WKKRKEFLLI  900
RQRIVKIQAH VRGHQVRKQY RAIIWSVGLL EKIILRWRRK GSGLRGFKRD TITKPAEPVC  960
PAPQEDDYDF LKEGRKQTEE RLQKALTRVK SMAQYPEARA QYRRLLTVVE GFRENEASSS  1020
SSALKNNNSN TEEAANYNEE DDLIDIDSLL DDDSFMSLAF E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g072910.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493811	0.0	AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220.
GenBank	AK229403	0.0	AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBank	BT010874	0.0	BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010461523.1	0.0	PREDICTED: calmodulin-binding transcription activator 2 isoform X1
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	D7MR88	0.0	D7MR88_ARALL; Calmodulin-binding protein
STRING	XP_010461523.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4082	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]