PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g072910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CAMTA | ||||||||
Protein Properties | Length: 1062aa MW: 118670 Da PI: 6.4689 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 188.3 | 7.8e-59 | 19 | 136 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+n++fq Csa02g072910.1 19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEDNENFQ 113 45559****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcyw+Le++l +iv+vhylevk Csa02g072910.1 114 RRCYWMLEQDLMHIVFVHYLEVK 136 ********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 86.275 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.6E-87 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.5E-52 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 2.87E-13 | 446 | 530 | IPR014756 | Immunoglobulin E-set |
PROSITE profile | PS50297 | 14.265 | 627 | 690 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.7E-15 | 628 | 763 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.87E-14 | 628 | 762 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.85E-10 | 639 | 760 | No hit | No description |
PROSITE profile | PS50088 | 8.843 | 644 | 676 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 0.32 | 876 | 898 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 8.5E-8 | 877 | 926 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.858 | 878 | 906 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.002 | 878 | 897 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0092 | 899 | 921 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.304 | 900 | 924 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 4.7E-4 | 902 | 921 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1062 aa Download sequence Send to blast |
MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML 120 EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS 180 GDSRQASSSL QPNPEPQTVV PQIIHHQNAS TMNSYNTASV LGNPDGWTSA PGIGILSQVH 240 GIRVKESDSQ RSGDVPAWDA SFENSLARYQ NLPYNAPLTQ TQPLQNQVNW QMPVQESVPL 300 QKWPMDSHSG MTDTTDLALF GQRGHENMGT FSSLLGSQNQ QPSSFQAPFT NNEAAYIPKV 360 GPEDLIYEAS ANQTLPLRKA LLKKEDSLKK VDSFSRWVSK ELGEMEDLQM QSSSGGIAWT 420 SVEYETAAAG SSLSPSLSEH QRFTMIDFWP KWTQTDSEVE VMVIGTFLLS PQEVNSYSWS 480 CMFGEVEVPA EILVDGVLCC HAPPHEVGRV PFYITCSDRF SCSEVREFDF LPGSTRKLNA 540 TDIYGANTIE ASLHLRFESL LALRSSVEEH HIFENVGEKR RKISKIMLLK DEKESLLPGT 600 VEKDLTELEA KERLIREEFE DKLYLWLIHK VTEEGKGPNI LDEDGQGVLH LAAALGYDWG 660 IKPILAAGVS INFRDANGWS ALHWAAFSGR QGPQHYLPSL AFFFIKKLLI IHHREDTVAV 720 LVSLGADAGA LADPSPEHPL GKTAADLAYG NGHRGISGFL AESSLTSYLE KLTVDAKENS 780 SADSSGAKAV LTVAERTATP MSYGDVPETL SMKDSLTAVL NATQAADRLH QVFRMQSFQR 840 KQLSELGGDN EFDISDELAV SFAAAKTKKP GHSNGAVHAA AVQIQKKYRG WKKRKEFLLI 900 RQRIVKIQAH VRGHQVRKQY RAIIWSVGLL EKIILRWRRK GSGLRGFKRD TITKPAEPVC 960 PAPQEDDYDF LKEGRKQTEE RLQKALTRVK SMAQYPEARA QYRRLLTVVE GFRENEASSS 1020 SSALKNNNSN TEEAANYNEE DDLIDIDSLL DDDSFMSLAF E* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g072910.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493811 | 0.0 | AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220. | |||
GenBank | AK229403 | 0.0 | AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08. | |||
GenBank | BT010874 | 0.0 | BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010461523.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 2 isoform X1 | ||||
Swissprot | Q6NPP4 | 0.0 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | D7MR88 | 0.0 | D7MR88_ARALL; Calmodulin-binding protein | ||||
STRING | XP_010461523.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4082 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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