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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa02g071140.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
Dof |
Protein Properties |
Length: 312aa MW: 33738.1 Da PI: 8.8507 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa02g071140.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 124.6 | 3.3e-39 | 12 | 71 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s
Csa02g071140.1 12 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 71
6789*****************************************************976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDGGRRLRPP HDHPQKCPRC ESTHTKFCYY NNYSLSQPRY FCKTCRRYWT KGGTLRNIPV 60 GGGCRKNKKP SSSNSSSSTS SGKKPSNIVT TNTTDLMALA QSHQNYQNSP LGFSHFGGMM 120 GSYSTPEHSN VGFLESKYGG LLSQSPRPID FLDSKFDLMG VNNDNLVMVD HGSNGDHHHH 180 HHHMGLHHGL GLNNNNGGFN GISPGSNGNG GGLMDISACQ RLMLSSYDHQ HYNHQEDHQR 240 VTTLTDVKPN PKLLSLDWQQ DQCYSNGGGN GGVGKSDGGG YGGGGYINGL GSSWNGLMNG 300 YGSSTKTNSL V*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:19915089, ECO:0000269|PubMed:30626969}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB009053 | 0.0 | AB009053.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2. |
GenBank | BT020467 | 0.0 | BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds. |
GenBank | BT020576 | 0.0 | BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |