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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa02g068390.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
NAC |
Protein Properties |
Length: 340aa MW: 38783.8 Da PI: 8.2104 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa02g068390.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 181.7 | 1.8e-56 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd++k+ePw+Lp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++
Csa02g068390.1 16 LPPGFRFHPTDEELITHYLHKKVLDISFSA-KAIGEVDLNKSEPWELPWMAKIGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR- 108
79**************************99.88***************888899****************************************. PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
+++lvg+kktLvfy+grapkg+kt+Wvmheyrle
Csa02g068390.1 109 GKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142
999*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD ISFSAKAIGE VDLNKSEPWE 60 LPWMAKIGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR 180 IGSLGTDFNP TLLPSLTDSS PYNNDKTKTE PVYVPCFSNQ TDQNQGTTTL NCFSSPALNS 240 IQTDIFHRIP LYQTQSLQAS TNLLHSPILA QEHSVLHAMI ENNRRQSHKT MSVSQETGVS 300 TDMNTDISSD FEFGKRRFDT QEDPSSSTGP VDLEPFWNY*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY054644 | 0.0 | AY054644.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds. |
GenBank | AY081496 | 0.0 | AY081496.1 Arabidopsis thaliana NAM (no apical meristem)-like protein (MFB13.22) mRNA, complete cds. |
GenBank | AY085102 | 0.0 | AY085102.1 Arabidopsis thaliana clone 12970 mRNA, complete sequence. |