PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g068380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 371aa MW: 41355.8 Da PI: 5.5581 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++l+ +++ +G g W+ I+++ g++R++k+c++rw +yl Csa02g068380.1 14 KGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.8e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+++++ +++ G++ W+ Iar+++ +Rt++++k++w+++l Csa02g068380.1 67 RGEFSSEEEQIIIMLHASRGNK-WSVIARHLP-RRTDNEIKNYWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.579 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.69E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.196 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.59E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MSRKPCCVGE GLKKGAWTTE EDKKLISYIH DHGEGGWRDI PQKAGLKRCG KSCRLRWTNY 60 LKPEIKRGEF SSEEEQIIIM LHASRGNKWS VIARHLPRRT DNEIKNYWNT HLKKRLVEQG 120 IDPVTHKPLA SNSNPTVHEN LNSLNASSPD NQYSRSSSMP SLSLPLSGCN IVSEVTELSS 180 NDGTPMQGGG TLRCKKIFNK SSSTSRLLNK VAAKATSIKD ILSASMEGSL SATTISHASF 240 FNGFSEQIRS EDDSSNASLT NLAEFDPFSQ SSLYPEHDIN ATSDLDMGQD YDFSHFLEKL 300 GVGNHDEENN MNVEYNHDLL MSDVSQEVSS TSVDDQDNMV GNFEGWSNYL LDHANFMYDT 360 DSDSLEKHFI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-25 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-25 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Major regulator of short-chained aliphatic glucosinolates (GLSs) biosynthesis. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:17521412, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g068380.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by glucose, gibberellic acid (GA), jasmonic acid (JA) and salicylic acid (SA). Transiently induced in inflorescence by mechanical stimuli such as touch or wounding, including herbivory-wounding. Up-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17521412, ECO:0000269|PubMed:23115560, ECO:0000269|PubMed:23792303}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF175998 | 0.0 | AF175998.1 Arabidopsis thaliana putative transcription factor (MYB28) mRNA, complete cds. | |||
GenBank | AY519643 | 0.0 | AY519643.1 Arabidopsis thaliana MYB transcription factor (At5g61420) mRNA, complete cds. | |||
GenBank | BT028959 | 0.0 | BT028959.1 Arabidopsis thaliana At5g61420 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010457323.1 | 0.0 | PREDICTED: transcription factor MYB28-like | ||||
Swissprot | Q9SPG2 | 0.0 | MYB28_ARATH; Transcription factor MYB28 | ||||
TrEMBL | D7MV18 | 0.0 | D7MV18_ARALL; Uncharacterized protein | ||||
STRING | XP_010457323.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3787 | 18 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61420.2 | 0.0 | myb domain protein 28 |