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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g068210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 40862.5 Da PI: 7.6111 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.5 | 3.2e-15 | 187 | 232 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hne ErrRRdriN+++ +L++llP+a K +K++iL ++ ++k+Lq Csa02g068210.1 187 HNESERRRRDRINQRMRTLQKLLPTA-----SKADKVSILDDVIAHLKQLQ 232 *************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.71 | 182 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-17 | 185 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-12 | 187 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.70E-8 | 187 | 236 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-16 | 187 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-16 | 188 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MHAMERFQCE SVETKMTSNY GVKELTWENG QLTVHGLGEE VEPTTSNDPI WSQSLNGCET 60 LESVVHQAAL QQPSKLQLQS PNGPNHNYES KDGSCSRKRG YPQEMDRWIA VQEESHRVGH 120 SVTASASGTN MSWASFESGR SLKTARTGDR DYVRSGSETQ DTEGDEQETR GDAGRSNGRR 180 GRAAAIHNES ERRRRDRINQ RMRTLQKLLP TASKADKVSI LDDVIAHLKQ LQAQVQFMSL 240 RANLPQQMMI PQLPPPQSVL SIQQQQQQQQ QQQQQQQQQF QMSLLATMAR MGMGGGGNAY 300 GGLVPPPPPP PPPPLMVPTM ANRDCTNGSS TALTDPYSAF FAQTMNMDLY NKMAAAIYRQ 360 QSDQTTK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 195 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting negatively in the phytochrome B signaling pathway under prolonged red light. Regulates PHYB abundance at the post-transcriptional level, possibly via the ubiquitin-proteasome pathway. May regulate the expression of a subset of genes by binding to the G-box motif. {ECO:0000269|PubMed:15486100, ECO:0000269|PubMed:18252845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g068210.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By red light. Stable upon light exposure. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488604 | 0.0 | AF488604.2 Arabidopsis thaliana clone bHLH072 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010457088.1 | 0.0 | PREDICTED: transcription factor PIF7 | ||||
Swissprot | Q570R7 | 0.0 | PIF7_ARATH; Transcription factor PIF7 | ||||
TrEMBL | R0G801 | 0.0 | R0G801_9BRAS; Uncharacterized protein | ||||
STRING | XP_010457088.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14123 | 18 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61270.1 | 1e-116 | phytochrome-interacting factor7 |