PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa02g067790.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 190aa MW: 22047.7 Da PI: 9.174

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g067790.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.8	2.7e-14	77	136	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r+rr+ +NRe+ArrsR+RKk++ieeL++ v++L N+ L +++ +l + ++ +e+ Csa02g067790.1 77 ERRARRMVSNRESARRSRLRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQVLQEN 136 689******************************************999999999888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-14	74	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.243	76	139	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.7E-14	77	136	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-11	78	134	No hit	No description
SuperFamily	SSF57959	6.88E-11	78	129	No hit	No description
CDD	cd14702	1.20E-15	79	130	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MIRNLKPYME SGVHRSHCFD IFEGVPLQDD HFNSAFLPNT DFNVQLQSAS TRSNNNQSQF 60 DANALNIFHN EGLLPEERRA RRMVSNRESA RRSRLRKKKQ IEELQQQVEQ LMMLNHHLSE 120 KVINLLESNH QVLQENSQLK EKVSSFHLLM ADVLLPMRNA ETNINDRNVN HYLRGETSNR 180 PTNNSPFGK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	96	RRSRLRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g067790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB015472	1e-175	AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.
GenBank	CP002688	1e-175	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010456776.1	1e-137	PREDICTED: basic leucine zipper 43-like
TrEMBL	Q9FJH3	1e-111	Q9FJH3_ARATH; Uncharacterized protein
STRING	XP_010456776.1	1e-136	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6185	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	1e-93	basic leucine-zipper 70