PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g067400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 423aa    MW: 47213.3 Da    PI: 10.1721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g067400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-057395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  Csa02g067400.1 73 FFCEICSKGFQREQNLQLHKRGH 95
                    67******************988 PP
2zf-C2H212.20.00054180197522
                     TTTEEESSHHHHHHHHHH CS
         zf-C2H2   5 dCgksFsrksnLkrHirt 22 
                     dCg++Fsrk+++ +H   
  Csa02g067400.1 180 DCGTVFSRKDSFISHRTF 197
                     9**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.07E-77295No hitNo description
Gene3DG3DSA:3.30.160.605.0E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.8E-57395IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0197395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7417395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355120115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.07E-7145170No hitNo description
SMARTSM00355190150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNHQDMMIPH NHDRLSVPSF VHAQEHITPN PNPNSKPAST STAKKKRNLP GNPDPDAEVI  60
ALSPKSLMAT NRFFCEICSK GFQREQNLQL HKRGHNLPWK LKQRTNKSQV KKKVYICPEK  120
SCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCDKCSKKYA VVSDWKAHSK ICGSREFRCD  180
CGTVFSRKDS FISHRTFCDV LAEESAKFFS VPSPKAANST ISIIADTNSP VFVQSQLDQS  240
LTGTGTNLNI NNNNTTLLRK NFTKSDSIPQ QTNAFPLSPQ PTPRGTSDSV HNLWKLREEE  300
YSNQWLLNEC MNNKNIIRKV VSTNQEDEIK KGNISSGSNS TDANIASLFS YNQEAGNQAS  360
LSATTLLQKV AQMGSSSSSD TSSMLGIMTS SIFNNRMPNS DGLKTKNKEK EWTRDFLGVK  420
KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-31146211368Zinc finger protein JACKDAW
5b3h_F4e-31146211368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g067400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019093141.10.0PREDICTED: protein indeterminate-domain 13-like
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLR0GM860.0R0GM86_9BRAS; Uncharacterized protein
STRINGXP_010483695.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.11e-178C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]