 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa02g067000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
AP2 |
| Protein Properties |
Length: 495aa MW: 53999.9 Da PI: 7.4422 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa02g067000.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.2 | 7.6e-17 | 157 | 206 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Csa02g067000.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 206
78*******************......55***********************9997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 495 aa
Download sequence Send
to blast |
MLDLNLSLDS VTVKGVSLNQ MDESVTSNSS VVNAEASSSC IDGEDELCST RTVKFQFEIL 60
KGGGDEDDDG YGDDERSDVM MTKEFFPVPR DGINFMDSSA QSSRSTVDIS FQRGNQVGDF 120
IGSGSGGGSG GGDAVRVMQP PSQPVKKSRR GPRSKSSQYR GVTFYRRTGR WESHIWDCGK 180
QVYLGGFDTA HAAARAYDRA AVKFRGLEAD INFVISDYEE DLKQMANLSK EEVVQVLRRQ 240
SSGFSRNNSR YQGVALQKIG GWGAQIEQFH GNMTNCLDSY GIRGCDKAAM QWNGRQAASL 300
IEPHASRMIP EAANVKLDLN LGISLSLGDG PKQKDRAQRL HHVPNSIVCG RNTKMENHMA 360
TASCDTPFNF LKRGSDHLSN RHSLPSAFFS PMERTPEKGL MLRSHQSFPA RTWQGHDQSS 420
GGTAVAATAP PLFSNAASSG FSLSDTRPPS SPATPHPSQP FFNLNQPGLY VVHPSDYASQ 480
NHHHNLMNRS QPPP*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AY074373 | 0.0 | AY074373.1 Arabidopsis thaliana At5g60120 mRNA sequence. |
| GenBank | BT001916 | 0.0 | BT001916.1 Arabidopsis thaliana clone C105157 putative APETALA2 protein (At5g60120) mRNA, complete cds. |
