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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa02g065160.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
GRAS |
Protein Properties |
Length: 614aa MW: 69767.5 Da PI: 6.0274 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa02g065160.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 401.1 | 1.1e-122 | 227 | 601 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfs 94
l++lL++cA+av+s d+++a++ L++++ ++s++gd +qRla+yf+ AL+ar+++ + ++ +p+s+ts +++ l+a+klf++++Pi+
Csa02g065160.1 227 LRSLLTQCAQAVASFDQRRATEKLKEIRSHSSSSGDGTQRLAFYFADALEARITGnIAPPVSTPFPSSTTS---MVDILKAYKLFVHTCPIYVTD 318
6899***************************************************6777777777777777...********************* PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
+++aN+ I+e + +++++Hi+Df++ +G+QWp+Ll aL++Rp+gpp+lR+Tg++ p+sg ++++eetg+rL++f+++++vpfefn+ +ak++e
Csa02g065160.1 319 YFAANKSIYELALKATTLHIVDFGVLYGFQWPCLLLALSKRPGGPPKLRVTGIELPQSGfrPSDRVEETGRRLKRFCDKFNVPFEFNF-IAKKWE 412
**********************************************************9*****************************.7***** PP
GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..e 280
+++l+e+ ++pgE+++Vn++++l++++de+vsl+s+rd+vLkl+++++P+++v++e + +ns+ F++rf eal ++s+lfd++++++ +e+ +
Csa02g065160.1 413 SISLDEIVINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHFSSLFDMFDTTIQAEDeyK 507
***************************************************************************************99998899 PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+r+ +E+ell r++++v++cegaer++r et+++Wr r+ +aGFkp+++s++++k+ak ++rk + + + ++++++++++gWk+r ++++S+W+
Csa02g065160.1 508 NRALLEKELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATISKQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWK 601
*****************************************************************999*************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 614 aa
Download sequence Send
to blast |
MDALLQVTVD GFRFENGSGS CCKPRNNLES GNNLFPDYHE PQTQSSSPND SPPSVCLDNS 60 PVLKYINDML MDEEDFVGES RDNLALQAAE RSFYEILQQQ SPESDHTTSS SSGDDPFFTS 120 ISTTTTSADS AALVSNGESQ RKYRHRDDEE DDLETYRRNK QPAIFVSEME ELAVKFEHVL 180 LVCKANQEED ESAITKQQSQ QQQPNRAGRA KGSSNKSKTQ KPNSVDLRSL LTQCAQAVAS 240 FDQRRATEKL KEIRSHSSSS GDGTQRLAFY FADALEARIT GNIAPPVSTP FPSSTTSMVD 300 ILKAYKLFVH TCPIYVTDYF AANKSIYELA LKATTLHIVD FGVLYGFQWP CLLLALSKRP 360 GGPPKLRVTG IELPQSGFRP SDRVEETGRR LKRFCDKFNV PFEFNFIAKK WESISLDEIV 420 INPGETTVVN CIHRLQYTPD ETVSLDSPRD TVLKLFRDIN PDLFVFAEIN GMYNSPFFMT 480 RFREALFHFS SLFDMFDTTI QAEDEYKNRA LLEKELLVRD AMSVISCEGA ERFARPETYK 540 QWRVRILRAG FKPATISKQI MKEAKEIVRK RYHRDFVIDS DNNWMLQGWK GRVIYAFSCW 600 KPAEKLTYNH VNI*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB025604 | 0.0 | AB025604.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F2O15. |
GenBank | AY035001 | 0.0 | AY035001.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds. |
GenBank | AY062942 | 0.0 | AY062942.1 Arabidopsis thaliana putative scarecrow 11 protein (At5g59450) mRNA, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |