PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g062930.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 448aa    MW: 50386.3 Da    PI: 5.423
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g062930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-10388444247
                      SSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg........tWktIartmg...kgRtlkqcksrwqky 47 
                      + WT eE e l ++vk++G+         +Wk I +  +     Rt+ ++k++w+++
   Csa02g062930.1 388 KFWTHEEVEALREGVKEYGNTlclvpygrSWKDIKNGNPavfAERTEVDLKDKWRNL 444
                      67****************************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.581382447IPR017930Myb domain
SuperFamilySSF466897.42E-11384444IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-10384444IPR009057Homeodomain-like
SMARTSM007173.8E-4386447IPR001005SANT/Myb domain
CDDcd116605.26E-14388445No hitNo description
PfamPF002496.7E-8390444IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEVFDNWVAE FVLLRQHNPR VLPTKLISAL QLGDSSDCLN LKISSVLRDI SNSLIRGAID  60
EGTLDLLEVL EKLLLQQHSL LMESHKSAYC WTAAECTLRF MWPLIASDGF FTEALERIWT  120
KRIGVLKERG SDLVSGDLLK WETDLKNALE DPELYQRIRE TNIRYTAITF LTQLLKEQWA  180
LLGSSSLESV VQRRFLKRKA DNVERGDTNA ADESTRRLES DTIDNANEPR GESGDGNGSN  240
RENDNDVEGV GCLVNEKHAS EEEQTVGAQE HEHEPSLDKG DETAARELKD YLLEIQGHID  300
PSTRQREEPN NAIDHSVNVT PPPTRLNRTG TSGQDHNEAP DNVNEKGSGS QGTWSGRVRR  360
RRPTPVPLNV SPLKKGGLAK SHVRRPKKFW THEEVEALRE GVKEYGNTLC LVPYGRSWKD  420
IKNGNPAVFA ERTEVDLKDK WRNLVGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192198RRFLKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g062930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192281e-175AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBankAY7357391e-175AY735739.1 Arabidopsis thaliana hypothetical protein AT5G58340 mRNA, complete cds.
GenBankAY9248701e-175AY924870.1 Arabidopsis thaliana hypothetical protein (At5g58340) mRNA, complete cds.
GenBankCP0026881e-175CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483423.10.0PREDICTED: uncharacterized protein LOC104761934 isoform X2
TrEMBLQ9LVL60.0Q9LVL6_ARATH; Gb|AAF63134.1
STRINGXP_010483420.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.20.0MYB_related family protein