PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g057420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 677aa    MW: 75132.1 Da    PI: 7.2181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g057420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-153077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede+l+ +v++ G g+W+++ +  g+ R++k+c++rw ++l
   Csa02g057420.1 30 KGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHL 77
                     79******************************************9986 PP
2Myb_DNA-binding461.2e-1483126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T +E+ l++++++qlG++ W++ a+ ++ gRt++++k++w++
   Csa02g057420.1  83 KGSFTGDEERLIIQLHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 126
                      789*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.982577IPR017930Myb domain
SMARTSM007171.6E-122979IPR001005SANT/Myb domain
SuperFamilySSF466897.42E-2829124IPR009057Homeodomain-like
PfamPF002493.1E-143077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-213184IPR009057Homeodomain-like
CDDcd001674.81E-103277No hitNo description
PROSITE profilePS5129424.13278132IPR017930Myb domain
SMARTSM007172.5E-1582130IPR001005SANT/Myb domain
PfamPF002492.3E-1383126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2485130IPR009057Homeodomain-like
CDDcd001671.22E-1085128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MIMYGGGGGG AGKDGGSTNH ISDGGVVLKK GPWTAAEDEI LAAYVRENGE GNWNAVQKNT  60
GLARCGKSCR LRWANHLRPN LKKGSFTGDE ERLIIQLHAQ LGNKWARMAA QLPGRTDNEI  120
KNYWNTRLKR LHRQGLPLYP PDIIPNHQLH PHPHQQQQHH HQQQQQHNHH HQQMYFQPHS  180
SQPNTPSSSP LPSPTPLNAN ANSPSSFTFH TPTANLLHPL SPHTPNTPQT PSQLYIIPNH  240
QLHPHPHQQQ QHHHQQQQQH NHHHQQMYFQ PHSSQPNTPS SSPLPSPTPL NANANSPSSF  300
TFHTPTANLL HPLSPHTPNT PQTPSQLCST PPPPPLSSPL SSPRNNQYPT LPLFALQHSQ  360
TNNNDANFTF PRPPPLLQPP SSLLAKRYNN ANTPLNCINR VSTAPFSPVS RESYTSFLTL  420
PYPSPTSQTA TYHNTNNNYS SSPSFSLNPS SSYPTTTSSP SYLHSHYTPS PTSFHTSPVY  480
SMKQEQLPSN QIPQIDAYNN INNFTDNERQ NHNLNSSGVH RRSSSCSLLE DVLEEAEVLA  540
AEGRDRPSKR RNLTASPPNH NNNNNDNDNF FSVSFGHYDS SDNLCSLQDL KPQEDESLQM  600
NTMQEDIAKL LDWGSDSGEI SNGQSSVVTD ENLVLDVHQF ASLFPADSTA VVTATNDHHN  660
NNNNNNCSWG DMQGLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-28271301103C-Myb DNA-Binding Domain
1msf_C1e-28271301103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g057420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5440140.0KC544014.1 Arabidopsis thaliana transcription factor MYB120 (MYB120) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091985.10.0PREDICTED: transcription factor MYB26-like
SwissprotQ94FL71e-118MY120_ARATH; Transcription factor MYB120
TrEMBLR0GJN21e-180R0GJN2_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.26833s0761.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.13e-92myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]