PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g055280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 409aa MW: 45454.1 Da PI: 4.6072 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 84 | 2.1e-26 | 216 | 306 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 r w+e+De+ lL G+++f++ +gk +++d d+fy+f+kks +k++ q ++Ki +LK K+ k+++k gk+ps k+ d k+fel kiWg Csa02g055280.1 216 PRFWTEDDEVRLLEGILEFQSAKGKTYTKDKDGFYNFIKKSFTVKATFAQCMSKISKLKTKYGKREEK---GKKPSALKPLDLKAFELYGKIWG 306 699*************************************************************9999...**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.8E-23 | 216 | 306 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MATKNDTSSV SSSSYESSSD EGEQVSTPSG PSATTLTKAA LGLQTKPSPP QEEEEHCGEQ 60 SSEEDEASSD SEQDEPTKEQ TPSKAEIAKE KKICVSSEEE EESSEEEDEA SSESTKEQTP 120 SKAEMIAKKN EIFVSSSEEE AKEDNSEEES SEEDEASLSK EEVPKKKETP SKAEIAKEKE 180 IYVSGKAQKR VSEGSSSEDM NAAKKVKTSD KKLIPPRFWT EDDEVRLLEG ILEFQSAKGK 240 TYTKDKDGFY NFIKKSFTVK ATFAQCMSKI SKLKTKYGKR EEKGKKPSAL KPLDLKAFEL 300 YGKIWGNSVP GSNAAEDSRS DGIQKLEGDH KDVMNHGKGG DWFSNSFLLP MVTHLGRDEN 360 EVKMDWGGVS EEKKREMMDR WRVLKTKDNE ILLQKTAFVD DIVSLIHR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g055280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475287.1 | 0.0 | PREDICTED: transcription factor STKL2-like | ||||
STRING | XP_010475287.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20482 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 5e-30 | DNA-binding storekeeper protein-related transcriptional regulator |