PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g055280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 409aa    MW: 45454.1 Da    PI: 4.6072
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g055280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573842.1e-26216306497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                      r w+e+De+ lL G+++f++ +gk +++d d+fy+f+kks  +k++  q ++Ki +LK K+ k+++k   gk+ps  k+ d k+fel  kiWg
  Csa02g055280.1 216 PRFWTEDDEVRLLEGILEFQSAKGKTYTKDKDGFYNFIKKSFTVKATFAQCMSKISKLKTKYGKREEK---GKKPSALKPLDLKAFELYGKIWG 306
                     699*************************************************************9999...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-23216306IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MATKNDTSSV SSSSYESSSD EGEQVSTPSG PSATTLTKAA LGLQTKPSPP QEEEEHCGEQ  60
SSEEDEASSD SEQDEPTKEQ TPSKAEIAKE KKICVSSEEE EESSEEEDEA SSESTKEQTP  120
SKAEMIAKKN EIFVSSSEEE AKEDNSEEES SEEDEASLSK EEVPKKKETP SKAEIAKEKE  180
IYVSGKAQKR VSEGSSSEDM NAAKKVKTSD KKLIPPRFWT EDDEVRLLEG ILEFQSAKGK  240
TYTKDKDGFY NFIKKSFTVK ATFAQCMSKI SKLKTKYGKR EEKGKKPSAL KPLDLKAFEL  300
YGKIWGNSVP GSNAAEDSRS DGIQKLEGDH KDVMNHGKGG DWFSNSFLLP MVTHLGRDEN  360
EVKMDWGGVS EEKKREMMDR WRVLKTKDNE ILLQKTAFVD DIVSLIHR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g055280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475287.10.0PREDICTED: transcription factor STKL2-like
STRINGXP_010475287.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2048245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-30DNA-binding storekeeper protein-related transcriptional regulator