PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g051680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 331aa    MW: 37902.8 Da    PI: 6.6442
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g051680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34561482103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++ei++d+ ++ ++sw+ + +sf+++d+ ef++++LpkyFkh+nf+SFvRQLn+YgFkkv++++         weF+++ F+ gkk+ll++
  Csa02g051680.1  56 FLRKTFEIVDDKVTDPVVSWNPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFVRQLNTYGFKKVDSDR---------WEFANEGFQGGKKHLLKN 141
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr++s+
  Csa02g051680.1 142 IKRRRSK 148
                     ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5252145IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3153145IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-3554145IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-175679IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3056145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1794106IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434095119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-17107119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
METVTVKGGE IGSGGGSSDD DVVSPTKEEA DAVNLTDSSS SVSFSKLHEI GVITPFLRKT  60
FEIVDDKVTD PVVSWNPTRK SFIIWDSYEF SENLLPKYFK HKNFSSFVRQ LNTYGFKKVD  120
SDRWEFANEG FQGGKKHLLK NIKRRRSKSN CNKEASTTGL KKTETEAELL KEDQNCPIRL  180
EVLKLKQQQE ESQDQMVTVQ EKIHGVETEQ RHMLSFFAKL AKDQRFVERL VRKRKMKQQR  240
ELEATEFVKK LKLLHDQETQ KNLVDVESQL IIREFMAMAA TTQPDHESDI SMNNNQSGST  300
RCQLNTEDIL VDVGSMGEKK IDVDVNWRIE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-215314517120Heat shock factor protein 1
5d5u_B7e-215314526129Heat shock factor protein 1
5d5v_B7e-215314526129Heat shock factor protein 1
5d5v_D7e-215314526129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g051680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019091513.10.0PREDICTED: heat stress transcription factor A-9-like
SwissprotQ9LVW21e-155HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLR0F1R41e-173R0F1R4_9BRAS; Uncharacterized protein
STRINGXP_010446368.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-154heat shock transcription factor A9