PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g044820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22757.6 Da    PI: 10.2859
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g044820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.4e-291363151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+lyeyss
  Csa02g044820.1 13 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLYEYSS 63
                    68***********************************************96 PP
2K-box70.17e-24881761098
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      e+  ++l++e++++ k+i+ L+  +R+l+G++L+s+s+ eLq++ +q+eksl+ +Rs+K el+  q+e+l++ke+el +e k+Lr+++
  Csa02g044820.1  88 VERYLQELKKEMDRMVKKIDLLEVHHRKLMGQGLGSCSVAELQEIDTQIEKSLRIVRSRKAELYAGQLEKLKEKERELLNERKRLREEV 176
                     5667899*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-40564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.497565IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-33794IPR002100Transcription factor, MADS-box
CDDcd002652.20E-42780No hitNo description
PRINTSPR004042.2E-29727IPR002100Transcription factor, MADS-box
PfamPF003193.1E-261461IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-292742IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-294263IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.36692182IPR002487Transcription factor, K-box
PfamPF014866.4E-2392176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAGKMVRGKI EIKKIENVTS RQVTFSKRRS GLFKKAHELS VLCDAQVAAI VFSQSGRLYE  60
YSSSEMEKII ERYGKFSNNS FVAERPQVER YLQELKKEMD RMVKKIDLLE VHHRKLMGQG  120
LGSCSVAELQ EIDTQIEKSL RIVRSRKAEL YAGQLEKLKE KERELLNERK RLREEVITHT  180
LILVLASVAL NFKAMLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-20577173MEF2 CHIMERA
6byy_B2e-20577173MEF2 CHIMERA
6byy_C2e-20577173MEF2 CHIMERA
6byy_D2e-20577173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g044820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412200.0AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087845.11e-121PREDICTED: MADS-box protein AGL71-like isoform X1
SwissprotQ9LT931e-110AGL71_ARATH; MADS-box protein AGL71
TrEMBLR0GS211e-109R0GS21_9BRAS; Uncharacterized protein
STRINGXP_010444025.11e-119(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.13e-98AGAMOUS-like 71