PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 411aa MW: 45939.1 Da PI: 7.2051

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa02g035670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.6e-33	231	289	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ C vkk+vers++dp++v +tYeg+H+h+ Csa02g035670.1 231 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVACGVKKRVERSSDDPSIVMTTYEGQHTHP 289 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.1E-34	216	291	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-29	224	291	IPR003657	WRKY domain
PROSITE profile	PS50811	31.927	226	291	IPR003657	WRKY domain
SMART	SM00774	5.1E-40	231	290	IPR003657	WRKY domain
Pfam	PF03106	9.6E-27	232	289	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MEKKIEEDHH HHHHQEKQQK EIKNTVTKIE HQRRQEQQQR QQISQASSSS NIMANLVTSS 60 DHHHHQLELA AGNNLSSIFD TSSLPFPYSY FEDQSSNNPN SFLDLLRQDH QFASSSNSSS 120 FSFDAFPLPT NNNNPFFTDL PLPQAESSEV VNTAPTSPNS TSFSSSSNEA ANDNNNSGKE 180 VTVKDQEEGD QQQDQKGTTT TKPQLKAKKK NQKKAREARF AFLTKSDIDN LDDGYRWRKY 240 GQKAVKNSPY PRSYYRCTTV ACGVKKRVER SSDDPSIVMT TYEGQHTHPF PMTPRGHIGM 300 LTSPILDHGA TTASSSSFSI PQPRYLLTQH HQPYNMYTNS SLSMINRSSS DGTFVNPGPS 360 SSFPGFGYDI SQASTSTSSS IRDHGLLQDI LPSQIRSDSV NTQTNEEVKK *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MEKKIEEDHH HHHHQEKQQK EIKNTVTKIE HQRRQEQQQR QQISQASSSS NIMANLVTSS  60
DHHHHQLELA AGNNLSSIFD TSSLPFPYSY FEDQSSNNPN SFLDLLRQDH QFASSSNSSS  120
FSFDAFPLPT NNNNPFFTDL PLPQAESSEV VNTAPTSPNS TSFSSSSNEA ANDNNNSGKE  180
VTVKDQEEGD QQQDQKGTTT TKPQLKAKKK NQKKAREARF AFLTKSDIDN LDDGYRWRKY  240
GQKAVKNSPY PRSYYRCTTV ACGVKKRVER SSDDPSIVMT TYEGQHTHPF PMTPRGHIGM  300
LTSPILDHGA TTASSSSFSI PQPRYLLTQH HQPYNMYTNS SLSMINRSSS DGTFVNPGPS  360
SSFPGFGYDI SQASTSTSSS IRDHGLLQDI LPSQIRSDSV NTQTNEEVKK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	224	291	10	77	Probable WRKY transcription factor 4
2lex_A	1e-26	224	291	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa02g035670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF442397	0.0	AF442397.1 Arabidopsis thaliana WRKY transcription factor 48 (WRKY48) mRNA, complete cds.
GenBank	AY063870	0.0	AY063870.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.
GenBank	AY091224	0.0	AY091224.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010440671.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	0.0	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	V4KQS3	0.0	V4KQS3_EUTSA; Uncharacterized protein
STRING	XP_010440671.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-149	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]