PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g035670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 411aa    MW: 45939.1 Da    PI: 7.2051
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g035670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.6e-33231289159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+s++prsYYrCt+  C vkk+vers++dp++v +tYeg+H+h+
  Csa02g035670.1 231 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVACGVKKRVERSSDDPSIVMTTYEGQHTHP 289
                     59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-34216291IPR003657WRKY domain
SuperFamilySSF1182901.96E-29224291IPR003657WRKY domain
PROSITE profilePS5081131.927226291IPR003657WRKY domain
SMARTSM007745.1E-40231290IPR003657WRKY domain
PfamPF031069.6E-27232289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEKKIEEDHH HHHHQEKQQK EIKNTVTKIE HQRRQEQQQR QQISQASSSS NIMANLVTSS  60
DHHHHQLELA AGNNLSSIFD TSSLPFPYSY FEDQSSNNPN SFLDLLRQDH QFASSSNSSS  120
FSFDAFPLPT NNNNPFFTDL PLPQAESSEV VNTAPTSPNS TSFSSSSNEA ANDNNNSGKE  180
VTVKDQEEGD QQQDQKGTTT TKPQLKAKKK NQKKAREARF AFLTKSDIDN LDDGYRWRKY  240
GQKAVKNSPY PRSYYRCTTV ACGVKKRVER SSDDPSIVMT TYEGQHTHPF PMTPRGHIGM  300
LTSPILDHGA TTASSSSFSI PQPRYLLTQH HQPYNMYTNS SLSMINRSSS DGTFVNPGPS  360
SSFPGFGYDI SQASTSTSSS IRDHGLLQDI LPSQIRSDSV NTQTNEEVKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-262242911077Probable WRKY transcription factor 4
2lex_A1e-262242911077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g035670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423970.0AF442397.1 Arabidopsis thaliana WRKY transcription factor 48 (WRKY48) mRNA, complete cds.
GenBankAY0638700.0AY063870.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.
GenBankAY0912240.0AY091224.1 Arabidopsis thaliana unknown protein (At5g49520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440671.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ40.0WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLV4KQS30.0V4KQS3_EUTSA; Uncharacterized protein
STRINGXP_010440671.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-149WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]