PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g026940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 293aa    MW: 33487.4 Da    PI: 9.2339
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g026940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221471.6e-4548127380
          DUF822   3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeae 80 
                     ++r+ptw+ErEnnkrRERrRR +aaki++GLR++Gnyklpk++DnneVlkALc+ AGw+ve+DGtty k +  +  ee+e
  Csa02g026940.1  48 GTRMPTWRERENNKRRERRRREMAAKIFTGLRMYGNYKLPKHCDNNEVLKALCNGAGWTVEPDGTTYSKMKIEQegEEKE 127
                     78******************************************************************876655333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.1E-4248128IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEYVNPEGLR LDVADSMSSG VFEMGNTKEI AVVYGPREKQ RTKKMTLGTR MPTWRERENN  60
KRRERRRREM AAKIFTGLRM YGNYKLPKHC DNNEVLKALC NGAGWTVEPD GTTYSKMKIE  120
QEGEEKEKEK RSVFGNQRRR KEADDSFNVL IVLKFAGEGG ERVDVQKLFA YIGLFTLVAL  180
WWLVWPLTAL GMNPSLPYHT LKVDEVVLAN GFVGSVLSEY FWYITMILCC QLDDSKSLAF  240
SDNFSKNLSS TETLSLEIYH SNNNIKRNTN LSQTQKLENL IGLRVNGIDI AK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-1750116372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-1750116372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-1750116372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-1750116372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16168RRERRRRE
26368ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g026940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0575383e-64AY057538.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds.
GenBankAY1130573e-64AY113057.1 Arabidopsis thaliana AT4g32140/F10N7_50 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155111117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-25BES1/BZR1 homolog 4