PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g018770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 376aa    MW: 39544.8 Da    PI: 4.5055
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g018770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35591512103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++elisw+++g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll++
  Csa02g018770.1  59 FLTKTYQLVDDPVYDELISWNDDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKILLRD 144
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  Csa02g018770.1 145 IQRRKIS 151
                     ****865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-5955148IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.9E-3856148IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3556148IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.0E-205982IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3159148IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434098122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-20110122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1708.7E-5225252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MPGEQTGETP TVAGVGGGGA GCSAGNSGGS SGCGAGGGGS GSAGGGGGGD SQRSIPTPFL  60
TKTYQLVDDP VYDELISWND DGTSFIVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR  120
KVVPDRWEFS NDCFRRGEKI LLRDIQRRKI SQPAMAAAAA AAAAAVAASA VTVAAVPVVA  180
HAVSPSNSGE EQVISSNSSP AAAAAATGVV GVGLQRTTSC TTAPELVEEN ERLRKENMQL  240
SQELTKLKGL YANIYTLMAN FTPGQADCAN LLPGKPLDLL PEKQGMSEEA IAMASRIDAG  300
SDLKLDDDLT PRLFGVSIGF KRARREEELG AAEEEDDDRQ EAVTREGEES SDVKPEPMEE  360
NNSSNHNGPW LELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-273714810129Heat shock factor protein 1
5d5v_B3e-273714810129Heat shock factor protein 1
5d5v_D3e-273714810129Heat shock factor protein 1
5hdg_A1e-275914810110Heat shock factor protein 1
5hdn_A1e-275914810110Heat shock factor protein 1
5hdn_B1e-275914810110Heat shock factor protein 1
5hdn_C1e-275914810110Heat shock factor protein 1
5hdn_D1e-275914810110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g018770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0932060.0AY093206.1 Arabidopsis thaliana heat shock transcription factor-like protein (At4g11660) mRNA, complete cds.
GenBankBT0084710.0BT008471.1 Arabidopsis thaliana At4g11660 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010434580.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-168HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLV4N0260.0V4N026_EUTSA; Uncharacterized protein
STRINGXP_010434580.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-153HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]