PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g015750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 467aa    MW: 52738.8 Da    PI: 4.6639
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g015750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.92.6e-19218276155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel....mkvkgLtlehvkSHLQkYRl 55 
                     kpr+ Wt eLH++F  ave++       Pk+il++    m+v+gLt+++v+SHLQkYR 
  Csa02g015750.1 218 KPRMSWTAELHQKFEAAVEKISRVGTPYPKEILKCmqeeMNVQGLTRNNVASHLQKYRH 276
                     79*******************88888889***9872333589****************6 PP
2Response_reg63.88.4e-22461511105
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHHHHHHHHHT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeeedalealka 92 
                     +l+vd + + + l+++++ +   ++v+  ++geea++ l +++  +Dl++   +mp+++Gl++l +i ++   +lp+++++ ++++e++ + +k 
  Csa02g015750.1  46 ILLVDTDSNSLLLMKTLMAQYYSSQVTIYENGEEAMDFLMKSKheIDLVIWNFNMPDISGLDALNTIgKQ-M-DLPVVIMSHEQDKETVMKSIKN 138
                     89*****************88888***************666667**********************555.4.7********************* PP

                     TESEEEESS--HH CS
    Response_reg  93 GakdflsKpfdpe 105
                     Ga dfl+Kp+++e
  Csa02g015750.1 139 GACDFLVKPMSKE 151
                     *********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.1E-2843168No hitNo description
SuperFamilySSF521721.99E-2643169IPR011006CheY-like superfamily
SMARTSM004484.3E-2044156IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.945161IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1846151IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.02E-1747156No hitNo description
SuperFamilySSF466897.7E-14215279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-21215278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-16218276IPR006447Myb domain, plants
PfamPF002492.1E-6220275IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSNILDENSH HLRKEVSACD DETEFPIINE DELDEDEEFA TTSIRILLVD TDSNSLLLMK  60
TLMAQYYSSQ VTIYENGEEA MDFLMKSKHE IDLVIWNFNM PDISGLDALN TIGKQMDLPV  120
VIMSHEQDKE TVMKSIKNGA CDFLVKPMSK EVVAVLWQHV FRKRMMSKSG LDQPGELDTV  180
ESDSYEFDDL KEDDIYRSNG EGSRNTSDQK EDKSTSKKPR MSWTAELHQK FEAAVEKISR  240
VGTPYPKEIL KCMQEEMNVQ GLTRNNVASH LQKYRHSSNK KTCSPQETGQ EDFDWPNAGQ  300
DPPLTASNPL LSSNVNLQTT PPFCMADQGA PRTSHFMNDQ AAVNAPYAYP PKNNFIMANH  360
VTTYIPQPPQ FHHPLNLPSM LPKQELGHVS SSAIDNSDLL IYKSTLPFGY GECFPHAGFN  420
NNNNNPDPFP PSGFNNMNNN NNREPFPPPG FNNNFESDWS KLNSHV*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g015750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626518e-54AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026868e-54CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468433.20.0PREDICTED: putative two-component response regulator ARR20
SwissprotQ9LZJ81e-162ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLR0HLD90.0R0HLD9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010468433.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-138response regulator 20