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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa02g011550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | G2-like | ||||||||
Protein Properties | Length: 162aa MW: 18642 Da PI: 6.9604 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 78 | 1.2e-24 | 15 | 68 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r++Wt + H+ Fveave LGG+ AtPk+il+ m+ +Ltl+++kSHLQ+YR Csa02g011550.1 15 SRMHWTDDRHHLFVEAVEFLGGERTATPKKILNYMDEGDLTLSQIKSHLQMYRN 68 69***************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 11 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.945 | 11 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.27E-16 | 15 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 15 | 70 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-7 | 16 | 67 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MRDAIVRSYV RSTMSRMHWT DDRHHLFVEA VEFLGGERTA TPKKILNYMD EGDLTLSQIK 60 SHLQMYRNKK EGVSVKERRM IREMNQRQSQ QYLQIYEYLQ DAIQNEISTK KVTPTEVSCK 120 SLYQSSRVGE NENKANDVIA AGDGANGEED MSLELTLGLK Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa02g011550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432590.1 | 1e-118 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R0HDE7 | 2e-69 | R0HDE7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010432590.1 | 1e-117 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04580.1 | 2e-52 | G2-like family protein |