PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa02g007790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 584aa    MW: 67500.6 Da    PI: 8.0677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa02g007790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.5e-09374416146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el ++  +++G++ Wkt a  mg  + + ++k+ w+ 
   Csa02g007790.1 374 KGVWTKEDLELVKQFQAKHGND-WKTLADAMG--KHRVHVKDAWRR 416
                      799*******************.********9..778999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-5300371IPR001005SANT/Myb domain
PROSITE profilePS500903.926303368IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-4303368IPR009057Homeodomain-like
PROSITE profilePS500906.284369417IPR017877Myb-like domain
SMARTSM007170.0017373420IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-6374432IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-6376425IPR009057Homeodomain-like
PfamPF139218.4E-11377434No hitNo description
PROSITE profilePS500907.34418486IPR017877Myb-like domain
SMARTSM0071715422488IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-5426486IPR009057Homeodomain-like
SuperFamilySSF466897.19E-6466544IPR009057Homeodomain-like
PROSITE profilePS500907.166488541IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MAKDKEKKKS DIRVDSVGTA VEVVPDHSSM KKKKQNRETK DGRERDKLGD DVVVKTKSKK  60
RMIDSEAEDD GKMKNKEKRV DSESEDGGKK KKKKKSKKKS EGDVGNSESS KVDEGIEGDE  120
KPLDDVDMNK LDEIDLGAQE NADSKMKRKS KKKTKQSVDS EVEDDNLNST KQSVDSEVQD  180
NNLNSTKAAK KRRKEKKQSV DTEAEENDLS STIDAKKKRK EKKKKKKRSE VSEAEESNNH  240
GKNAKKKRKR QESGESDKDV TTPSSKSSKK VKFSDQVEIF QSEDEETDEE VEVEEVKLVR  300
GKRFTKEEDE LIKKAVYDYI DNHALGDEGL KMVMDCKSHK QVKGCWKEIE SALPWRPRFS  360
VYHRAHNLFE EGSKGVWTKE DLELVKQFQA KHGNDWKTLA DAMGKHRVHV KDAWRRIRLN  420
MNKGHWSREE YQSLYDLVNK DLRMKAFQEK HSKHGMLRDN IPWMAISDVL GTRDHVTCCN  480
KWYDQLISPM VVNGTWANVD DYRLMEELLK LDAACIDDVD WDYLLENRDG EACRKRWNQM  540
IRHIGIPTSK TFAEQVEILS GRYCPELAQD REDFDNRPYD PED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18998KKKKKKSKKK
2189193KKRRK
3217224KRKEKKKK
4218226RKEKKKKKK
5221227KKKKKKR
6225247KKRSEVSEAEESNNHGKNAKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa02g007790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430979.10.0PREDICTED: transcription termination factor 1-like
TrEMBLD7MJ000.0D7MJ00_ARALL; Uncharacterized protein
STRINGXP_010430979.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein