PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa01g044350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CPP | ||||||||
Protein Properties | Length: 566aa MW: 60826.3 Da PI: 8.1584 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.1 | 9.7e-15 | 118 | 157 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ e Csa01g044350.1 118 QKKKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCFNNVE 157 589**************************.********975 PP | |||||||
2 | TCR | 49.9 | 6.3e-16 | 204 | 242 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 + kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Csa01g044350.1 204 HYKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFE 242 789**********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.1E-16 | 118 | 158 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.427 | 119 | 243 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.0E-11 | 120 | 155 | IPR005172 | CRC domain |
SMART | SM01114 | 7.1E-19 | 203 | 244 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 206 | 241 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MGEGEGEGDK LPPKKDEVIT QDSMKSARQL DFTHVVHPPH SNQAPVTSIP SPAVTATPPI 60 TTSQARPVST TTVATPIPPP PQPQGLLHVP IRHPERFESP NSKPRPVGVG ETRDGTPQKK 120 KQCNCKHSRC LKLYCECFAS GTYCDGCNCV NCFNNVEFDT ARREAVQTIL DRNPNAFKPK 180 IASSPHGGRD SREEVGEPVM LGKHYKGCHC KKSGCLKKYC ECFQANILCS ENCKCLDCKN 240 FEGSEDRQSL FHGEHSHNVA YLQHVNAAIT GAIGSYGFAS APGPKRKKGQ EFFYNQGTKD 300 SPTHRLGQAN TGRTPSSETD SRAGGPSKVV YRSLLADIIQ PKNVKALCSV LVAVAGEAAK 360 ALTEKRLADQ KETSVSSSVQ DQGQGNNKGT EIEIAATGNQ AEKSGPEDSS SDGSKGRSLS 420 PDTLALMCDE RDTMLMVAAS PKGSVEPTSQ LPNGGQDQFY AEQEKVVLTK FRDCLNQIIS 480 CGELKESNFS SSRMNLDTPA HTAVKVQPVV QQRPVANGVS QTIKQPSQLT TTTPTPTPTA 540 TTTTPTTSAQ TQLHKTPALS EKKDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-35 | 110 | 252 | 1 | 132 | Protein lin-54 homolog |
5fd3_B | 3e-35 | 110 | 252 | 1 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00269 | DAP | Transfer from AT2G20110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa01g044350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493556 | 0.0 | AB493556.1 Arabidopsis thaliana At2g20110 mRNA for hypothetical protein, partial cds, clone: RAAt2g20110. | |||
GenBank | AY163775 | 0.0 | AY163775.1 Arabidopsis thaliana hypothetical protein (T2G17.9) mRNA, partial cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010416287.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 6 | ||||
Swissprot | Q9SL70 | 0.0 | TCX6_ARATH; Protein tesmin/TSO1-like CXC 6 | ||||
TrEMBL | A0A1P8B2C5 | 0.0 | A0A1P8B2C5_ARATH; Tesmin/TSO1-like CXC domain-containing protein | ||||
STRING | XP_010416280.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |